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Table 2 Primers used in virotyping PCR reactions, with their sequence, size of ampliconsand biological function of targeted genes

From: Comparison of the phylogenetic analysis of PFGE profiles and the characteristic of virulence genes in clinical and reptile associated Salmonella strains

Gene target

Primer sequence

Amplicon size (bp)

Function of gene

invA

F-CTGGCGGTGGGTTTTGTTGTCTTCTCTATT

1070

Host recognition/invasion

R-AGTTTCTCCCCCTCTTCATGCGTTACCC

orgA

F-TTTTTGGCAATGCATCAGGGAACA

255

Host recognition/invasion

R-GGCGAAAGCGGGGACGGTATT

prgH

F-GCCCGAGCAGCCTGAGAAGTTAGAAA

756

Host recognition/invasion

R-TGAAATGAGCGCCCCTTGAGCCAGTC

spaN

F-AAAAGCCGTGGAATCCGTTAGTGAAGT

504

Entry into nonphagocytic cells, killing of macrophages

R-CAGCGCTGGGGATTACCGTTTTG

tolC

F-TACCCAGGCGCAAAAAGAGGCTATC

161

Host recognition/invasion

R-CCGCGTTATCCAGGTTGTTGC

sipB

F-GGACGCCGCCCGGGAAAAACTCTC

875

Entry into nonphagocytic cells, killing of macrophages

R-ACACTCCCGTCGCCGCCTTCACAA

sitC

F-CAGTATATGCTCAACGCGATGTGGGTCTCC

768

Iron acquisition

R-CGGGGCGAAAATAAAGGCTGTGATGAAC

pagC

F-CGCCTTTTCCGTGGGGTATGC

454

Survival within macrophage

R-GAAGCCGTTTATTTTTGTAGAGGAGATGTT

msgA

F-GCCAGGCGCACGCGAAATCATCC

189

Survival within macrophage

R-GCGACCAGCCACATATCAGCCTCTTCAAAC

spiA

F-CCAGGGGTCGTTAGTGTATTGCGTGAGATG

550

Survival within macrophage

R-CGCGTAACAAAGAACCCGTAGTGATGGATT

iroN

F-ACTGGCACGGCTCGCTGTCGCTCTAT

1205

Iron acquisition

R-CGCTTTACCGCCGTTCTGCCACTGC

sopB

F-GGACCGGCCAGCAACAAAACAAGAAGAAG

220

Host recognition/invasion

R-TAGTGATGCCCGTTATGCGTGAGTGTATT

lpfC

F-GCCCCGCCTGAAGCCTGTGTTGC

641

Host recognition/invasion

R-AGGTCGCCGCTGTTTGAGGTTGGATA

cdtB

F-ACAACTGTCGCATCTCGCCCCGTCATT

268

Host recognition/invasion

R-CAATTTGCGTGGGTTCTGTAGGTGCGAGT

sifA

F-TTTGCCGAACGCGCCCCCACACG

449

Filamentous structure formation

R-GTTGCCTTTTCTTGCGCTTTCCACCCATCT

pefA

F-GCGCCGCTCAGCCGAACCAG

157

Host recognition/invasion

R-GCAGCAGAAGCCCAGGAAACAGTG

spvB

F-CTATCAGCCCCGCACGGAGAGCAGTTTTTA

717

Growth within host

R-GGAGGAGGCGGTGGCGGTGGCATCATA