Gene target | Primer sequence | Amplicon size (bp) | Function of gene |
---|---|---|---|
invA | F-CTGGCGGTGGGTTTTGTTGTCTTCTCTATT | 1070 | Host recognition/invasion |
R-AGTTTCTCCCCCTCTTCATGCGTTACCC | |||
orgA | F-TTTTTGGCAATGCATCAGGGAACA | 255 | Host recognition/invasion |
R-GGCGAAAGCGGGGACGGTATT | |||
prgH | F-GCCCGAGCAGCCTGAGAAGTTAGAAA | 756 | Host recognition/invasion |
R-TGAAATGAGCGCCCCTTGAGCCAGTC | |||
spaN | F-AAAAGCCGTGGAATCCGTTAGTGAAGT | 504 | Entry into nonphagocytic cells, killing of macrophages |
R-CAGCGCTGGGGATTACCGTTTTG | |||
tolC | F-TACCCAGGCGCAAAAAGAGGCTATC | 161 | Host recognition/invasion |
R-CCGCGTTATCCAGGTTGTTGC | |||
sipB | F-GGACGCCGCCCGGGAAAAACTCTC | 875 | Entry into nonphagocytic cells, killing of macrophages |
R-ACACTCCCGTCGCCGCCTTCACAA | |||
sitC | F-CAGTATATGCTCAACGCGATGTGGGTCTCC | 768 | Iron acquisition |
R-CGGGGCGAAAATAAAGGCTGTGATGAAC | |||
pagC | F-CGCCTTTTCCGTGGGGTATGC | 454 | Survival within macrophage |
R-GAAGCCGTTTATTTTTGTAGAGGAGATGTT | |||
msgA | F-GCCAGGCGCACGCGAAATCATCC | 189 | Survival within macrophage |
R-GCGACCAGCCACATATCAGCCTCTTCAAAC | |||
spiA | F-CCAGGGGTCGTTAGTGTATTGCGTGAGATG | 550 | Survival within macrophage |
R-CGCGTAACAAAGAACCCGTAGTGATGGATT | |||
iroN | F-ACTGGCACGGCTCGCTGTCGCTCTAT | 1205 | Iron acquisition |
R-CGCTTTACCGCCGTTCTGCCACTGC | |||
sopB | F-GGACCGGCCAGCAACAAAACAAGAAGAAG | 220 | Host recognition/invasion |
R-TAGTGATGCCCGTTATGCGTGAGTGTATT | |||
lpfC | F-GCCCCGCCTGAAGCCTGTGTTGC | 641 | Host recognition/invasion |
R-AGGTCGCCGCTGTTTGAGGTTGGATA | |||
cdtB | F-ACAACTGTCGCATCTCGCCCCGTCATT | 268 | Host recognition/invasion |
R-CAATTTGCGTGGGTTCTGTAGGTGCGAGT | |||
sifA | F-TTTGCCGAACGCGCCCCCACACG | 449 | Filamentous structure formation |
R-GTTGCCTTTTCTTGCGCTTTCCACCCATCT | |||
pefA | F-GCGCCGCTCAGCCGAACCAG | 157 | Host recognition/invasion |
R-GCAGCAGAAGCCCAGGAAACAGTG | |||
spvB | F-CTATCAGCCCCGCACGGAGAGCAGTTTTTA | 717 | Growth within host |
R-GGAGGAGGCGGTGGCGGTGGCATCATA |