Table 3 Pairwise comparison of 3D and VP1 genes of Thai CaKoVs (CU-101) and reference CaKoVs
From: First detection and genetic characterization of canine Kobuvirus in domestic dogs in Thailand
Viruses | Accession number | Year | Country | % nucleotide identity (% amino acid identity) | |
|---|---|---|---|---|---|
3D | VP1 | ||||
CaKoV/CU-101/THA/2016 | This study | 2016 | Thailand | 100 (100) | 100 (100) |
CaKoV/CU-53/THA/2016 | This study | 2016 | Thailand | 99.5 (100) | 99.9 (100) |
CaKoV/CU-83/THA/2016 | This study | 2016 | Thailand | 98.8 (100) | 99.7 (100) |
CaKoV/CU-100/THA/2016 | This study | 2016 | Thailand | 97.9 (100) | 93.6 (97.8) |
CaKoV/CU-125/THA/2016 | This study | 2016 | Thailand | 97.1 (98.6) | 94.9 (97.8) |
CaKoV/CU-224/THA/2017 | This study | 2017 | Thailand | 98.6 (100) | 93.6 (97.8) |
CaKoV/CU-241/THA/2017 | This study | 2017 | Thailand | 99.0 (100) | 94.5 (98.7) |
CaKoV/CU-249/THA/2017 | This study | 2017 | Thailand | 98.8 (100) | 93.6 (97.4) |
CaKoV/CU-250/THA/2017 | This study | 2017 | Thailand | 98.1 (100) | 96.6 (96.9) |
CaKoV/CU-260/THA/2017 | This study | 2017 | Thailand | 98.6 (100) | 93.4 (96.9) |
CaKoV/CU-273/THA/2017 | This study | 2017 | Thailand | 98.6 (100) | 98.5 (99.1) |
CaKoV/CU-716/THA/2018 | This study | 2018 | Thailand | 98.8 (100) | 94.3 (98.7) |
CaKoV/26/BRA/2016 | MH747478 | 2016 | Brazil | 97.1 (99.3) | 82.2 (84.2) |
CaKoV/CE9/AUS/2012 | MH052678 | 2012 | Australia | 97.6 (100) | 83.7 (87.7) |
CaKoV/B103/TZ/2010 | KM068051 | 2010 | African | 93.6 (98.6) | 84.8 (88.2) |
CaKov/75/TZ/2011 | KM068050 | 2011 | African | 94.0 (97.9) | 83.8 (86.4) |
CaKoV/82/TZ/2010 | KM068049 | 2010 | African | 94.5 (98.6) | 84.3 (86.4) |
CaKoV/DD2/TZ/2003 | KM068048 | 2003 | African | 94.8 (99.3) | 84.0 (87.7) |
CaKoV/UK003/UK/2008 | KC161964 | 2008 | UK | 96.0 (100) | 85.3 (88.2) |
CaKoV/US-PC0082/USA/2010 | JN088541 | 2010 | USA | 94.0 (99.3) | 84.5 (86.4) |
CaKoV/AN211D/USA/2009 | JN387133 | 2009 | USA | 95.2 (99.3) | 84.4 (86.8) |
CaKoV/86c/IT/2012 | KC693050 | 2012 | Italy | 96.0 (99.3) | N/A |
CKoV/19c/IT/2012 | KC693045 | 2012 | Italy | 96.2 (99.3) | N/A |
CaKoV/Ca-Gifu0226/JPN/2014 | LC147655 | 2014 | Japan | 97.6 (99.3) | N/A |
CaKoV/Ca-Tokyo1173/JPN/2012 | LC147656 | 2012 | Japan | 97.9 (100) | N/A |
CaKoV/12D049/KOR/2012 | KF924623 | 2012 | Korea | 97.1 (100) | 84.7 (89.0) |
CaKoV/CH-1/CHN/2011 | JQ911763 | 2016 | China | 97.9 (100) | 91.3 (89.9) |
CaKoV/SMCD-59/CHN/2015 | MF062158 | 2015 | China | 97.1 (100) | 96.4 (96.9) |
CaKoV/SMCD-57/CHN/2015 | MF062173 | 2015 | China | 97.9 (100) | 96.8 (97.8) |