Table 2 Pairwise comparison of whole genome of Thai CaKoVs (CU-101) and reference CaKoVs
From: First detection and genetic characterization of canine Kobuvirus in domestic dogs in Thailand
% nucleotide identity (% amino acid identity) | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Virus | Accession number | Year | Country | WGS | VP0 | VP3 | VP1 | 2A | 2B | 2C | 3A | 3B | 3C | 3D |
CaKoV/CU-101/THA/2016 | This study | 2016 | Thailand | 100 (100) | 100 (100) | 100 (100) | 100 (100) | 100 (100) | 100 (100) | 100 (100) | 100 (100) | 100 (100) | 100 (100) | 100 (100) |
CaKoV/CU-53/THA/2016 | This study | 2016 | Thailand | 99.3 (100) | 99.8 (100) | 99.3 (100) | 99.5 (100) | 100 (100) | 97.1 (100) | 99.4 (100) | 100 (100) | 100 (100) | 100 (100) | 98.8 (100) |
CaKoV/CU-249/THA/2017 | This study | 2017 | Thailand | 96.7 (99.6) | 96.2 (100) | 97.2 (99.6) | 94.3 (98.2) | 100 (100) | 97 (100) | 97.2 (100) | 97.2 (98.9) | 96.3 (100) | 97.6 (99.7) | 97.5 (100) |
CaKoV/CU-716 /THA/2018 | This study | 2018 | Thailand | 96.7 (99.8) | 95.2 (100) | 97.5 (99.6) | 95.2 (99.6) | 100 (100) | 96 (100) | 96.8 (100) | 96.8 (98.9) | 96.3 (96.3) | 98.3 (99.7) | 97.5 (100) |
CaKoV/CH-1/CHN/2011 | JQ911763 | 2011 | China | 96.8 (98.7) | 97.4 (99.7) | 97.6 (99.6) | 91.2 (91.8) | 98.3 (100) | 97.1 (100) | 97.3 (99.7) | 98.6 (100) | 100 (100) | 98.5 (99.7) | 97.1 (100) |
CaKoV/SMCD-59/CHN/2015 | NC034971 | 2015 | China | 97 (99.5) | 92.5 (98.7) | 93 (99.6) | 96.5 (97.8) | 100 (100) | 95.3 (100) | 96 (100) | 94.7 (97.9) | 89 (96.3) | 95.6 (99.2) | 95.3 (99.6) |
CaKoV/12D049/KOR/2012 | KF924623 | 2012 | Korea | 94.2 (97.9) | 93.2 (98.7) | 93.2 (99.6) | 85.5 (90) | 100 (100) | 97.3 (100) | 96.4 (99.1) | 97.2 (98.9) | 93.9 (96.3) | 96.9 (98.7) | 94.7 (98.5) |
CaKoV/U\K003/UK/2008 | KC161964 | 2008 | UK | 93.6 (98.1) | 92.4 (99) | 95.2 (99.6) | 86 (89.6) | 100 (100) | 93.4 (99) | 95.3 (99.7) | 94.3 (98.9) | 91.5 (96.3) | 95.9 (99.2) | 96.4 (100) |
CaKoV/26/BRA/2016 | MH747478 | 2016 | Brazil | 92.8 (97.9) | 91.1 (99) | 91.7 (99.1) | 83.2 (86) | 100 (100) | 95.6 (100) | 95.8 (100) | 96.5 (98.9) | 87.8 (96.3) | 94.7 (98.2) | 96.5 (99.6) |
CaKoV/US-PC0082/USA/2010 | JN088541 | 2010 | USA | 93.4 (97.7) | 91.1 (97.4) | 92.3 (99.1) | 85.7 (88.2) | 100 (100) | 93.3 (98) | 94.2 (99.4) | 92.9 (98.9) | 89 (96.3) | 94.6 (99) | 94.4 (98.9) |
CaKoV/CE9/AUS/2012 | MH052678 | 2012 | Australia | 93.7 (97.6) | 97.6 (99.5) | 96.4 (100) | 85.7 (90) | 100 (100) | 97.6 (100) | 97.6 (100) | 96.8 (98.9) | 95.1 (100) | 97.4 (99.5) | 97 (100) |
CaKov/75/TZ/2011 | KM068050 | 2011 | African | 92.1 (97.5) | 92.5 (99.2) | 92.4 (99.6) | 84.2 (88.5) | 100 (100) | 96.3 (99.5) | 95.6 (99.4) | 95 (98.9) | 90.2 (96.3) | 96.4 (99.2) | 96.5 (99.6) |
CaKoV/B103/TZ/2010 | KM068051 | 2010 | African | 92.2 (97.5) | 90.8 (96.9) | 91.8 (98.7) | 84.7 (89.2) | 100 (100) | 93.4 (99) | 93.8 (99.4) | 92.9 (98.9) | 89 (96.3) | 94.6 (99.2) | 94.9(99.3) |
CaKoV/DD2/TZ/2003 | KM068048 | 2003 | African | 92.3 (97.9) | 91 (98.7) | 94.1 (99.6) | 84.3 (89.2) | 100 (100) | 93.4 (99) | 93.2 (98.8) | 92.6 (98.9) | 89 (96.3) | 94.9 (99.2) | 94.9 (99.6) |
CaKoV/82/TZ/2010 | KM068049 | 2010 | African | 91.8 (96.5) | 91 (97.1) | 92.4 (99.1) | 84.2 (87.8) | 100 (100) | 93.3 (98) | 92.8 (98.8) | 92.2 (97.9) | 91.5 (96.3) | 94.4 (98.7) | 94.4 (98.9) |