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Table 2 Pairwise comparison of whole genome of Thai CaKoVs (CU-101) and reference CaKoVs

From: First detection and genetic characterization of canine Kobuvirus in domestic dogs in Thailand

  % nucleotide identity (% amino acid identity)
Virus Accession number Year Country WGS VP0 VP3 VP1 2A 2B 2C 3A 3B 3C 3D
CaKoV/CU-101/THA/2016 This study 2016 Thailand 100 (100) 100 (100) 100 (100) 100 (100) 100 (100) 100 (100) 100 (100) 100 (100) 100 (100) 100 (100) 100 (100)
CaKoV/CU-53/THA/2016 This study 2016 Thailand 99.3 (100) 99.8 (100) 99.3 (100) 99.5 (100) 100 (100) 97.1 (100) 99.4 (100) 100 (100) 100 (100) 100 (100) 98.8 (100)
CaKoV/CU-249/THA/2017 This study 2017 Thailand 96.7 (99.6) 96.2 (100) 97.2 (99.6) 94.3 (98.2) 100 (100) 97 (100) 97.2 (100) 97.2 (98.9) 96.3 (100) 97.6 (99.7) 97.5 (100)
CaKoV/CU-716 /THA/2018 This study 2018 Thailand 96.7 (99.8) 95.2 (100) 97.5 (99.6) 95.2 (99.6) 100 (100) 96 (100) 96.8 (100) 96.8 (98.9) 96.3 (96.3) 98.3 (99.7) 97.5 (100)
CaKoV/CH-1/CHN/2011 JQ911763 2011 China 96.8 (98.7) 97.4 (99.7) 97.6 (99.6) 91.2 (91.8) 98.3 (100) 97.1 (100) 97.3 (99.7) 98.6 (100) 100 (100) 98.5 (99.7) 97.1 (100)
CaKoV/SMCD-59/CHN/2015 NC034971 2015 China 97 (99.5) 92.5 (98.7) 93 (99.6) 96.5 (97.8) 100 (100) 95.3 (100) 96 (100) 94.7 (97.9) 89 (96.3) 95.6 (99.2) 95.3 (99.6)
CaKoV/12D049/KOR/2012 KF924623 2012 Korea 94.2 (97.9) 93.2 (98.7) 93.2 (99.6) 85.5 (90) 100 (100) 97.3 (100) 96.4 (99.1) 97.2 (98.9) 93.9 (96.3) 96.9 (98.7) 94.7 (98.5)
CaKoV/U\K003/UK/2008 KC161964 2008 UK 93.6 (98.1) 92.4 (99) 95.2 (99.6) 86 (89.6) 100 (100) 93.4 (99) 95.3 (99.7) 94.3 (98.9) 91.5 (96.3) 95.9 (99.2) 96.4 (100)
CaKoV/26/BRA/2016 MH747478 2016 Brazil 92.8 (97.9) 91.1 (99) 91.7 (99.1) 83.2 (86) 100 (100) 95.6 (100) 95.8 (100) 96.5 (98.9) 87.8 (96.3) 94.7 (98.2) 96.5 (99.6)
CaKoV/US-PC0082/USA/2010 JN088541 2010 USA 93.4 (97.7) 91.1 (97.4) 92.3 (99.1) 85.7 (88.2) 100 (100) 93.3 (98) 94.2 (99.4) 92.9 (98.9) 89 (96.3) 94.6 (99) 94.4 (98.9)
CaKoV/CE9/AUS/2012 MH052678 2012 Australia 93.7 (97.6) 97.6 (99.5) 96.4 (100) 85.7 (90) 100 (100) 97.6 (100) 97.6 (100) 96.8 (98.9) 95.1 (100) 97.4 (99.5) 97 (100)
CaKov/75/TZ/2011 KM068050 2011 African 92.1 (97.5) 92.5 (99.2) 92.4 (99.6) 84.2 (88.5) 100 (100) 96.3 (99.5) 95.6 (99.4) 95 (98.9) 90.2 (96.3) 96.4 (99.2) 96.5 (99.6)
CaKoV/B103/TZ/2010 KM068051 2010 African 92.2 (97.5) 90.8 (96.9) 91.8 (98.7) 84.7 (89.2) 100 (100) 93.4 (99) 93.8 (99.4) 92.9 (98.9) 89 (96.3) 94.6 (99.2) 94.9(99.3)
CaKoV/DD2/TZ/2003 KM068048 2003 African 92.3 (97.9) 91 (98.7) 94.1 (99.6) 84.3 (89.2) 100 (100) 93.4 (99) 93.2 (98.8) 92.6 (98.9) 89 (96.3) 94.9 (99.2) 94.9 (99.6)
CaKoV/82/TZ/2010 KM068049 2010 African 91.8 (96.5) 91 (97.1) 92.4 (99.1) 84.2 (87.8) 100 (100) 93.3 (98) 92.8 (98.8) 92.2 (97.9) 91.5 (96.3) 94.4 (98.7) 94.4 (98.9)