Skip to main content

Table 3 Primers used in this study

From: Detection and genetic characteristics of porcine circovirus 3 based on oral fluids from asymptomatic pigs in central China

Primer name

Nucleotide Sequence

Primer location (nt)

Product length (bp)

Purpose

Resource

PCV3-D-F

CCACAGAAGGCGCTATGTC

1909–1927 a

330

Detection

[4]

PCV3-D-R

CCGCATAAGGGTCGTCTTG

1599–1617 a

PCV3-N2-F

AGGAGGTTCACTAAGGTTGT

1026–1045 a

1313

Genome sequencing (nested PCR For G2 fragment)

This study

PCV3-N2-R

CTCTTTGCCGATAATAAGGTAT

317–338 a

PCV3-G2-F

TTGCACTTGTGTACAATTATTGCG

1113–1136 a

1075

[3]

PCV3-G2-R

ATCTTCAGGACACTCGTAGCACCAC

2163–0-187 a

PCV3-G1-F

TAGTATTACCCGGCACCTCGGAACC

1994-0-18 a

1257

Genome sequencing (nested PCR For N1 fragment)

[3]

PCV3-G1-R

ACAGGTAAACGCCCTCGCATGTGGG

1226–1250 a

PCV3-N1-F

GATGAAGCGGCCTCGTGT

106–123 a

1064

This study

PCV3-N1-R

CACCCACCCTCCCAATAA

1152–1169 a

PCV3-Cap-F

ATGAGACACAGAGCTATATT

1961–1980 a

645

Cap gene sequencing

This study

PCV3-Cap-R

TTAGAGAACGGACTTGTAAC

1336–1355 a

PCV2-F

AAGGGCTGGGTTATGGTATG

1621–1640 b

353

Detection

This study

PCV2-R

CGCTGGAGAAGGAAAAATGG

187–206 b

  1. Numbers correspond to positions within the PCV3 strain KY418606 a and PCV2 strain AF055394 b