Genetic analysis of porcine productive and respiratory syndrome virus between 2013 and 2014 in Southern parts of China: identification of several novel strains with amino acid deletions or insertions in nsp2

Table 3 The information of reference strains used in this study

No.	Virus strain	Accession no.	Country	Lineage
1	NADC30	JN654459	American	1
2	MN184	EF442777	American	1
3	CHsx1401	KP861625	China	1
4	HNhx	KX766379	China	1
5	PRRSV0000008659	EU758687	American	2
6	PRRSV0000008973	EU758940	American	2
7	PRRSV0000031	DQ474791	American	2
8	FJ-1	AY881994	China	3
9	GD-KP	KU978619	China	3
10	GM2	JN662424	China	3
11	Ibaraki08–5	AB546113	Japan	4
12	Miyagi08–2	AB546105	Japan	4
13	Miyagi08–3	AB546106	Japan	4
14	VR-23332	AY150564	American	5
15	NADC-8	AF396833	American	5
16	PA8	AH006184	Canada	5
17	NVSL-14	AF396839	American	6
18	Aichi N20	AB175715	Japan	7
19	Neb-1	EU755263	American	7
20	PrimePac	AF066384	American	7
21	CH-1a	AY032626	China	8.1
22	HH08	JX679179	China	8.1
23	HBJM2	EU399826	China	8.2
24	HBSZ	EU399825	China	8.2
25	JXA1	EF112445	China	8.3
26	JXwn06	EF641008	China	8.3
27	TJ	EU860248	China	8.3
28	GXLSN06–2012	KC618172	China	8.4
29	JXZX2	EU399849	China	8.4
30	AHW01	EU399828	China	8.5
31	HeN-2	FJ237419	China	8.5
32	JXZX2	HQ832215	China	8.6
33	Yunnan-08	EU819086	China	8.6
34	HK1	KF287132	China	8.7
35	HK4	KF287134	China	8.7
36	JA-142	AF396842	American	9
37	SDSU73	AY656993	American	9
38	B1	AY318773	American	9
39	LV	M96262	Netherlands

ISSN: 1746-6148