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Table 2 Comparison of the nucleotide and/or amino acid sequences identities of complete ORF3, 5’UTR and 3’UTR gene sequences among avian HEV strains

From: Meta-transcriptomic analysis reveals a new subtype of genotype 3 avian hepatitis E virus in chicken flocks with high mortality in Guangdong, China

Gene

Strains

1

2

3

4

5

6

7

8

9

10

11

12

ORF3

1 MK050107/China

 

93.9

92.8

92.8

95.5

95.8

95.8

95.8

93.2

93.2

93.2

93.2

2 AM943647/ Australia

95.4

 

96.6

95.8

93.9

93.6

94.3

94.3

95.5

95.5

95.5

95.5

3 JN597006/South Korea

94.3

96.6

 

95.8

93.6

93.2

93.9

93.2

95.1

95.1

95.1

95.1

4 KC454286/South Korea

93.1

95.4

96.6

 

93.6

93.2

93.9

94.3

93.9

93.2

93.2

93.2

5 GU954430/China

94.3

92.0

90.8

92.0

 

98.9

95.8

95.1

93.2

93.9

93.9

93.9

6 AM943646/Hungary

94.3

92.0

90.8

92.0

97.7

 

96.2

95.5

92.8

93.6

93.6

93.6

7 JN997392/Hungary

96.6

94.3

93.1

92.0

93.1

93.1

 

97.0

92.8

92.8

92.8

94.3

8 KF511797/Taiwan

100

95.4

94.3

93.1

94.3

94.3

96.6

 

92.0

92.0

92.0

92.0

9 KM377618/South Korea

92.0

95.4

92.0

90.8

87.4

87.4

89.7

92.0

 

97.0

97.0

97.0

10 AY535004/United States

93.1

96.6

93.1

92.0

88.5

88.5

90.8

93.1

98.9

 

100

97.0

11 NC023425/ United States

93.1

96.6

93.1

92.0

88.5

88.5

90.8

93.1

98.9

100

 

97.0

12 EF206691/ United States

89.7

94.3

90.8

89.7

88.5

88.5

93.1

89.7

94.3

95.4

95.4

 

3’UTR

/5’UTR

1 MK050107/China

 

77.5

76.7

74.4

82.9

83.7

54.3

74.4

78.3

76.0

76.0

81.4

2 AM943647/ Australia

—

 

89.1

89.9

79.1

80.6

55.0

76.0

79.1

79.8

79.8

78.3

3 JN597006/South Korea

84.0

—

 

96.1

81.4

82.2

53.5

82.9

77.5

77.5

77.5

76.7

4 KC454286/South Korea

88.0

—

96.0

 

79.1

79.8

52.7

79.1

78.3

76.7

76.7

76.0

5 GU954430/China

64.0

—

64.0

68.0

 

97.7

54.3

83.7

85.3

83.7

83.7

85.3

6 AM943646/Hungary

—

—

—

—

—

 

55.8

81.4

86.0

82.9

82.9

86.0

7 JN997392/Hungary

—

—

—

—

—

—

 

51.2

55.8

53.5

53.5

55.8

8 KF511797/Taiwan

80.0

—

88.0

92.0

60.0

—

—

 

79.8

84.5

84.5

82.2

9 KM377618/South Korea

88.0

—

96.0

100

68.0

—

—

92.0

 

89.1

89.1

93.0

10 AY535004/USA

88.0

—

96.0

100

68.0

—

—

92.0

100

 

100.0

91.5

11 NC023425/USA

88.0

—

96.0

100

68.0

—

—

92.0

100

100

 

91.5

12 EF206691/USA

88.0

—

96.0

100

68.0

—

—

92.0

100

100

100

 
  1. The comparison was done using MegAlign ClustalW analysis. Boldface indicates percentage identities of amino acid sequences. The italic font numbers show the nucleotide sequences identities of 5’UTR among the avian HEV strains. —: Sequence couldn’t be obtained from GenBank