Gene | Strains | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ORF3 | 1 MK050107/China | Â | 93.9 | 92.8 | 92.8 | 95.5 | 95.8 | 95.8 | 95.8 | 93.2 | 93.2 | 93.2 | 93.2 |
2 AM943647/ Australia | 95.4 | Â | 96.6 | 95.8 | 93.9 | 93.6 | 94.3 | 94.3 | 95.5 | 95.5 | 95.5 | 95.5 | |
3 JN597006/South Korea | 94.3 | 96.6 | Â | 95.8 | 93.6 | 93.2 | 93.9 | 93.2 | 95.1 | 95.1 | 95.1 | 95.1 | |
4 KC454286/South Korea | 93.1 | 95.4 | 96.6 | Â | 93.6 | 93.2 | 93.9 | 94.3 | 93.9 | 93.2 | 93.2 | 93.2 | |
5 GU954430/China | 94.3 | 92.0 | 90.8 | 92.0 | Â | 98.9 | 95.8 | 95.1 | 93.2 | 93.9 | 93.9 | 93.9 | |
6 AM943646/Hungary | 94.3 | 92.0 | 90.8 | 92.0 | 97.7 | Â | 96.2 | 95.5 | 92.8 | 93.6 | 93.6 | 93.6 | |
7 JN997392/Hungary | 96.6 | 94.3 | 93.1 | 92.0 | 93.1 | 93.1 | Â | 97.0 | 92.8 | 92.8 | 92.8 | 94.3 | |
8 KF511797/Taiwan | 100 | 95.4 | 94.3 | 93.1 | 94.3 | 94.3 | 96.6 | Â | 92.0 | 92.0 | 92.0 | 92.0 | |
9 KM377618/South Korea | 92.0 | 95.4 | 92.0 | 90.8 | 87.4 | 87.4 | 89.7 | 92.0 | Â | 97.0 | 97.0 | 97.0 | |
10 AY535004/United States | 93.1 | 96.6 | 93.1 | 92.0 | 88.5 | 88.5 | 90.8 | 93.1 | 98.9 | Â | 100 | 97.0 | |
11 NC023425/ United States | 93.1 | 96.6 | 93.1 | 92.0 | 88.5 | 88.5 | 90.8 | 93.1 | 98.9 | 100 | Â | 97.0 | |
12 EF206691/ United States | 89.7 | 94.3 | 90.8 | 89.7 | 88.5 | 88.5 | 93.1 | 89.7 | 94.3 | 95.4 | 95.4 | Â | |
3’UTR /5’UTR | 1 MK050107/China |  | 77.5 | 76.7 | 74.4 | 82.9 | 83.7 | 54.3 | 74.4 | 78.3 | 76.0 | 76.0 | 81.4 |
2 AM943647/ Australia | — |  | 89.1 | 89.9 | 79.1 | 80.6 | 55.0 | 76.0 | 79.1 | 79.8 | 79.8 | 78.3 | |
3 JN597006/South Korea | 84.0 | — |  | 96.1 | 81.4 | 82.2 | 53.5 | 82.9 | 77.5 | 77.5 | 77.5 | 76.7 | |
4 KC454286/South Korea | 88.0 | — | 96.0 |  | 79.1 | 79.8 | 52.7 | 79.1 | 78.3 | 76.7 | 76.7 | 76.0 | |
5 GU954430/China | 64.0 | — | 64.0 | 68.0 |  | 97.7 | 54.3 | 83.7 | 85.3 | 83.7 | 83.7 | 85.3 | |
6 AM943646/Hungary | — | — | — | — | — |  | 55.8 | 81.4 | 86.0 | 82.9 | 82.9 | 86.0 | |
7 JN997392/Hungary | — | — | — | — | — | — |  | 51.2 | 55.8 | 53.5 | 53.5 | 55.8 | |
8 KF511797/Taiwan | 80.0 | — | 88.0 | 92.0 | 60.0 | — | — |  | 79.8 | 84.5 | 84.5 | 82.2 | |
9 KM377618/South Korea | 88.0 | — | 96.0 | 100 | 68.0 | — | — | 92.0 |  | 89.1 | 89.1 | 93.0 | |
10 AY535004/USA | 88.0 | — | 96.0 | 100 | 68.0 | — | — | 92.0 | 100 |  | 100.0 | 91.5 | |
11 NC023425/USA | 88.0 | — | 96.0 | 100 | 68.0 | — | — | 92.0 | 100 | 100 |  | 91.5 | |
12 EF206691/USA | 88.0 | — | 96.0 | 100 | 68.0 | — | — | 92.0 | 100 | 100 | 100 |  |