Molecular characterization of two novel reoviruses isolated from Muscovy ducklings in Guangdong, China

BMC Veterinary Research

Table 1 General genome features of two novel Muscovy duck reovirus strains SH12/DH13 isolated in Guangdong province of China

Genome segment	Size (bp)		Lengh (bp) of the 5’end-ORF-3′		Sequence at the termini 5′ end/3’end		Contig location	Protein size (aa)	Encoded protein
Genome segment	SH12	DH13	SH12	DH13	SH12	DH13	Contig location	Protein size (aa)	Encoded protein
L1	3959	3959	21–3882-56	21–3882-56	GCUUUUU/UCAUC	GCUUUUU/UCAUC	22~3903	1293	λA (core shell)
L2	3830	3830	14–3780-36	14–3780-36	GCUUUUU/UCAUC	GCUUUUU/UCAUC	15~3794	1259	λB (core RdRp)
L3	3907	3907	12–3858-37	12–3858-37	GCUUUUU/UCAUC	GCUUUUU/UCAUC	13~3870	1285	λC (core turret)
M1	2283	2283	12–2199-72	12–2199-72	GCUUUUU/UCAUC	GCUUUUU/UCAUC	13~2211	732	μA (core NTPase)
M2	2158	2158	29–2028-101	29–2028-101	GCUUUUU/UCAUC	GCUUUUU/UCAUC	30~2057	675	μB (outer shell)
M3	1996	1996	24–1908-64	24–1908-64	GCUUUUU/UCAUC	GCUUUUU/UCAUC	25~1932	635	μNS (NS factory)
S1	1568	1568	19–1517-32	19–1517-32	GCUUUUU/UCAUC	GCUUUUU/UCAUC	20~313	97	p10 (NS -FAST)
							273~761	162	p18 (NS other)
							571~1536	321	σC (outer fibe)
S2	1324	1324	15–1251-58	15–1251-58	GCUUUUU/UCAUC	GCUUUUU/UCAUC	16~1266	416	σA (core clamp)
S3	1202	1202	30–1104-68	30–1104-68	GCUUUUU/UCAUC	GCUUUUU/UCAUC	31~1134	367	σB (outer clamp)
S4	1191	1191	23–1104-64	23–1104-64	GCUUUUU/UCAUC	GCUUUUU/UCAUC	24~1127	367	σNS (NS RNAb)

ISSN: 1746-6148