Skip to main content

Table 5 HEV near-full-length PCR primers

From: The prevalence and genomic characteristics of hepatitis E virus in murine rodents and house shrews from several regions in China

Primer

Orientation

Sequence (5'-3')

Target fragment (base pairs)

HEV-F15

Sense (first/second round)

AGACCCATCARTATGTCG

921 (this study)

HEV-R935

Antisense (second round)

GTDGAYCKRGMCTTCTCACA

HEV-R977

Antisense (first round)

CATRAGYCKRTCCCADAT

HEV-F827

Sense (first/second round)

CATCTATGTGCGCAGCCTGT

1340 (this study)

HEV-R2166

Antisense (second round)

GTGGACAAACTGGGTGCGATC

HEV-R2228

Antisense (first round)

GTGCCACAGCGTGTATTATAG

HEV-F2084

Sense (first/second round)

GCNGTNTATGARGGRGAY

955 (this study)

HEV-R3038

Antisense (second round)

CAAAATCWATNGCNGGGATCTG

HEV-R3053

Antisense (first round)

ATVAGVCCCTTGCTYTCAAAATC

HEV-F2868

Sense (first/second round)

TKAARGCNCARTGGMGDG

841 (this study)

HEV-R3708

Antisense (second round)

ARBAYDGTCACCTGVTCHC

HEV-R3740

Antisense (first round)

ATRCGRCARTGCACDGT

HEV-F3539

Sense (first/second round)

ACCAACTTGCAGGATATAG

699 (this study)

HEV-R4237

Antisense (second round)

AAACTCGCTAAAATCATTCTCAA

HEV-R4253

Antisense (first round)

ATTCTGGGTGCTGTCAAACTCG

HEV-F4980

Sense (first/second round)

TCGTGCTCGTGYTTTTGCT

1029 (this study)

HEV-R6008

Antisense (second round)

CCTATRTCRCCYACMCCRTT

HEV-R6014

Antisense (first round)

CCCTTRCCTATRTCRCCYAC

HEV-F5552

Sense (first/second round)

GTRTCAATGTCRTTYTGG

1153 (this study)

HEV-R6704

Antisense (second round)

RTTAACAGGYCCAGYACC

HEV-R6836

Antisense (first round)

ATWGCATCAGCMACGAGGCA

HEV-F6300

Sense (first/second round)

CAACTGGCGGTCTGGTGATGTC

535 (this study)

HEV-R6881

Antisense (second round)

AGACACTGTCGGCTGCTGC

HEV-R6834

Antisense (first round)

GCATCAGCCACGAGGCAGG

HE607

Sense (first round)

CTTGGTTYAGGGCCATAGAG

880 [23]

HE604

Antisense (first round)

CAGCAGCGGCACGAACAGCA

HE608

Sense (second round)

TTYAGGGCCATAGAGAAGGC

HE606

Antisense (second round)

ACAGCAAAAGCACGAGCACG