From: Intestinal microbiota mediates Enterotoxigenic Escherichia coli-induced diarrhea in piglets
Group | No. of reads | No. of OTUa | Coverageb | Richness estimator | Diversity index | ||
---|---|---|---|---|---|---|---|
Ace(95% CI) | Chao(95% CI) | Shannon (95% CI) | Simpson(95% CI) | ||||
Jejunum | |||||||
 Control | 22,244 | 148 | 99.85% | 178 (162–210) | 198 (168–271) | 2.91 (2.89–2.93) | 0.09 (0.095–0.099) |
 Diarrhea | 8672 | 121 | 99.51% | 199 (171–242) | 183 (149–258) | 2.67(2.64–2.7) | 0.10(0.10–0.11) |
 Resistant | 11,338 | 152 | 99.86% | 161 (155–176) | 161 (155–182) | 3.35 (3.33–3.38) | 0.069 (0.067–0.071) |
 Transplanted-ND | 20,681 | 113 | 99.83% | 186 (158–231) | 166 (135–236) | 2.64 (2.63–2.66) | 0.117(0.115–0.119) |
 Transplanted-D | 15,902 | 108 | 99.81% | 137 (122–168) | 130 (117–161) | 2.21(2.18–2.23) | 0.225 (0.219–0.231) |
Feces | |||||||
 Control | 19,789 | 305 | 99.81% | 326 (316–346) | 326 (314–352) | 3.85(3.83–3.88) | 0.065 (0.063–0.067) |
 Pre-diarrhea | 11,543 | 277 | 99.61% | 308 (294–332) | 305 (290–336) | 3.71 (3.67–3.74) | 0.076 (0.073–0.079) |
 Diarrhea | 22,342 | 327 | 99.72% | 372 (254–402) | 392 (290–336) | 2.94(2.91–2.97) | 0.176 (0.172–0.18) |
 Resistant | 17,855 | 288 | 99.75% | 314 (302–335) | 322 (304–360) | 3.49(3.46–3.52) | 0.094 (0.091–0.097) |
 Transplanted-ND | 12,222 | 276 | 99.60% | 309 (295–339) | 325 (300–376) | 3.9(3.87–3.93) | 0.048(0.046–0.05) |
 Transplanted-D | 11,545 | 295 | 99.43% | 347 (327–381) | 360 (330–416) | 3.66(3.63–3.7) | 0.075(0.072–0.078) |