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Table 2 Sequence variation in multiple sequences alignment

From: Specific detection of Muscovy duck parvovirus infection by TaqMan-based real-time PCR assay

Primers

Sequence(5′ → 3′)b1

Frequency

GenBank accession numbers MDPVsb2

MDPV-qF

TACGAATGAACAAACCAA

80.0% (12/15)

/

CACGAATGAACAAACCAA

13.33% (2/15)

KU844281, JF926697

TACGAATGAACGAACCAA

6.67% (1/15)

KC171936

MDPV-qR

CGCTCTTAATATCTCCTCTA

93.33% (14/15)

/

TAGAAGAGATATTAAGAGCG

6.67% (1/15)

KT865605

MDPV-qP

TGAACGAGCGAATGAGCCTTCC

100% (15/15)

/

  1. b1The variations are marked as Bold and underline
  2. b2The GenBank accession numbers of MDPV strains used in this study are as follows: U22967, KU844282, KX000918, JF926698, KM093740, KY744743, KY069274, JF926695, KY511293, JF926696, X75093, KU844281, JF926697, KC171936, and KT865605. Only variations from GenBank accession numbers of MDPV strains have been marked