Table 3 Homology of the different parts of genome and proteins of GSWW/2015 compared with representative strains of PRRSV
From: The molecular characteristic analysis of PRRSV GSWW/2015 strain and its pathogenicity to pigs
| Â | HUN4 | CH-1a | VR-2332 | LV |
|---|---|---|---|---|
Complete | 96.9 | 93.5 | 88.5 | 60.6 |
5’ UTR | 99.5 | 97.3 | 92.0 | 62.0 |
ORF1a | 96.3 | 92.2 | 86.3 | 57.3 |
ORF1b | 96.9 | 94.4 | 90.2 | 63.3 |
ORF2 | 98.1 | 95.3 | 93.3 | 66.0 |
ORF3 | 97.0 | 94.1 | 87.8 | 64.8 |
ORF4 | 97.4 | 95.0 | 89.2 | 67.4 |
ORF5 | 97.0 | 92.9 | 87.7 | 64.1 |
ORF6 | 99.6 | 97.3 | 95.2 | 69.5 |
ORF7 | 99.5 | 96.2 | 93.5 | 68.7 |
3’UTR | 98.4 | 95.3 | 92.0 | 74.6 |
NSP2 | 93.0 | 84.3 | 73.0 | 37.5 |
GP2 | 96.1 | 93.8 | 92.6 | 61.8 |
GP3 | 94.5 | 90.6 | 85.0 | 55.7 |
GP4 | 97.8 | 97.2 | 89.9 | 70.8 |
GP5 | 95.5 | 90.5 | 87.5 | 58.2 |
M | 99.4 | 97.7 | 97.7 | 80.3 |
N | 100.0 | 95.1 | 95.1 | 65.0 |