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Table 4 Detailed comparison of the full-length genomes of the 8 newly emerged sub-genotype 2.1d CSFVs to other CSFV representative isolates (%)

From: Complete genomic characteristics and pathogenic analysis of the newly emerged classical swine fever virus in China

  Shimen (1.1) Paderborn (2.1a) HEBZ (2.1b) HNSD-2012 (2.1c) Zj0801 (2.1d) CSFV39 (2.2) Alfort (2.3) TWN (3.4)
Nucleotides
 5’UTR 91.4–92.2 96.5–97.3 95.4–96.2 94.4–95.2 97.0–98.7 91.6–92.5 93.3–94.1 90.3–91.9
 Npro 87.1–88.1 94.0–94.8 94.2–95.4 92.1–92.7 96.8–98.0 88.3–89.1 88.3–88.9 84.1–85.3
 C 84.5–86.2 94.3–95.3 93.3–94.6 90.2–92.3 95.6–97.3 89.6–90.9 89.9–91.2 83.2–84.8
 Erns 84.1–85.3 93.2–94.6 96.5–97.1 92.1–93.1 97.7–98.2 89.4–89.7 89.6–90.5 82.4–8.4
 E1 84.4–85.3 93.8–94.7 96.4–97.3 91.3–92.1 97.6–98.5 90.3–91.5 88.4–89.6 81.4–82.1
 E2 83.5–84.3 93.5–94.3 95.5–96.5 90.1–91.0 96.6–97.1 87.0–87.5 86.9–87.8 82.0–82.4
 P7 79.7–81.6 90.8–93.2 95.2–97.1 91.8–94.2 95.7–98.6 87.4–89.4 88.4–90.3 82.6–85.5
 NS2 82.6–83.4 92.9–93.4 96.2–96.6 91.8–92.3 96.9–97.5 89.1–89.6 88.5–89.1 80.2–81.0
 NS3 86.4–87.0 94.6–95.1 95.7–96.1 92.8–93.6 97.1–97.4 90.3–91.0 90.8–91.7 85.4–86.1
 NS4A 86.2–87.8 94.7–96.3 94.2–95.8 91.0–92.6 97.9–98.9 87.8–89.4 87.8–89.4 82.5–94.1
 NS4B 85.8–86.5 92.8–93.6 95.0–95.8 90.1–91.1 96.6–97.8 89.3–90.0 88.4–89.1 83.1–84.1
 NS5A 83.7–84.3 93.6–94.0 96.2–96.7 90.7–91.3 97.0–97.3 83.8–84.3 90.6–90.9 82.5–82.9
 NS5B 84.7–85.3 94.9–95.3 95.8–96.4 92.5–93.2 97.5–97.8 85.2–85.7 89.5–89.9 83.4–83.7
 3’UTR 84.1–85.0 93.8–95.1 94.7–96.0 93.8–95.6 97.3–98.7 83.6–84.4 92.9–94.2 82.6–84.0
 Complete 85.0–85.3 94.1–94.4 95.9–96.2 91.9–92.3 97.2–97.5 87.9–88.2 89.6–89.9 83.4–83.7
Amino acid
 Npro 91.7–92.9 94.6–95.8 95.8–97.0 94.6–95.8 96.4–97.6 91.7–92.9 92.3–92.9 90.5–91.7
 C 92.9–94.9 93.9–97.0 94.9–97.0 91.9–94.9 96.0–98.0 91.9–96.0 92.9–94.9 88.9–90.9
 Erns 89.0–89.9 96.9–97.8 97.4–98.2 96.9–97.8 98.7–99.6 94.3–95.2 95.6–96.0 90.3–91.2
 E1 92.8–93.8 97.4–98.5 96.9–97.9 94.9–95.9 99.5–100.0 96.9–97.9 96.4–97.4 88.7–90.3
 E2 90.1–91.2 95.4–96.5 96.2–97.6 94.9–95.7 97.1–98.1 90.9–92.0 91.4–92.5 89.0–90.1
 P7 88.4–89.9 95.7–98.6 92.8–95.7 94.2–97.1 95.7–98.6 94.2–95.7 94.2–95.7 91.3–94.2
 NS2 89.7–90.6 95.6–96.3 97.4–98.0 95.8–96.3 97.2–98.0 94.7–95.2 93.4–94.1 86.9–87.7
 NS3 97.7–98.5 98.7–99.6 98.4–99.1 98.1–98.8 98.1–98.8 97.9–98.7 98.4–99.1 97.8–98.7
 NS4Aa 98.4 100.0 98.4 95.2 100.0 96.8 100.0 95.2
 NS4B 95.1–96.3 97.4–98.6 97.7–98.6 98.3–99.4 98.3–98.8 96.5–97.1 97.4–98.6 93.7–94.8
 NS5A 87.5–89.0 95.6–96.6 96.2–97.4 93.2–94.8 96.4–97.2 87.1–88.0 93.2–94.0 86.3–87.3
 NS5B 92.3–93.2 97.5–98.2 97.6–98.3 97.3–98.0 98.0–98.7 93.0–93.9 96.2–97.2 89.8–90.9
  1. aThe amino acid homology of NS4A protein of the 8 new isolates between each other was 100%