| Shimen (1.1) | Paderborn (2.1a) | HEBZ (2.1b) | HNSD-2012 (2.1c) | Zj0801 (2.1d) | CSFV39 (2.2) | Alfort (2.3) | TWN (3.4) |
---|---|---|---|---|---|---|---|---|
Nucleotides | ||||||||
 5’UTR | 91.4–92.2 | 96.5–97.3 | 95.4–96.2 | 94.4–95.2 | 97.0–98.7 | 91.6–92.5 | 93.3–94.1 | 90.3–91.9 |
 Npro | 87.1–88.1 | 94.0–94.8 | 94.2–95.4 | 92.1–92.7 | 96.8–98.0 | 88.3–89.1 | 88.3–88.9 | 84.1–85.3 |
 C | 84.5–86.2 | 94.3–95.3 | 93.3–94.6 | 90.2–92.3 | 95.6–97.3 | 89.6–90.9 | 89.9–91.2 | 83.2–84.8 |
 Erns | 84.1–85.3 | 93.2–94.6 | 96.5–97.1 | 92.1–93.1 | 97.7–98.2 | 89.4–89.7 | 89.6–90.5 | 82.4–8.4 |
 E1 | 84.4–85.3 | 93.8–94.7 | 96.4–97.3 | 91.3–92.1 | 97.6–98.5 | 90.3–91.5 | 88.4–89.6 | 81.4–82.1 |
 E2 | 83.5–84.3 | 93.5–94.3 | 95.5–96.5 | 90.1–91.0 | 96.6–97.1 | 87.0–87.5 | 86.9–87.8 | 82.0–82.4 |
 P7 | 79.7–81.6 | 90.8–93.2 | 95.2–97.1 | 91.8–94.2 | 95.7–98.6 | 87.4–89.4 | 88.4–90.3 | 82.6–85.5 |
 NS2 | 82.6–83.4 | 92.9–93.4 | 96.2–96.6 | 91.8–92.3 | 96.9–97.5 | 89.1–89.6 | 88.5–89.1 | 80.2–81.0 |
 NS3 | 86.4–87.0 | 94.6–95.1 | 95.7–96.1 | 92.8–93.6 | 97.1–97.4 | 90.3–91.0 | 90.8–91.7 | 85.4–86.1 |
 NS4A | 86.2–87.8 | 94.7–96.3 | 94.2–95.8 | 91.0–92.6 | 97.9–98.9 | 87.8–89.4 | 87.8–89.4 | 82.5–94.1 |
 NS4B | 85.8–86.5 | 92.8–93.6 | 95.0–95.8 | 90.1–91.1 | 96.6–97.8 | 89.3–90.0 | 88.4–89.1 | 83.1–84.1 |
 NS5A | 83.7–84.3 | 93.6–94.0 | 96.2–96.7 | 90.7–91.3 | 97.0–97.3 | 83.8–84.3 | 90.6–90.9 | 82.5–82.9 |
 NS5B | 84.7–85.3 | 94.9–95.3 | 95.8–96.4 | 92.5–93.2 | 97.5–97.8 | 85.2–85.7 | 89.5–89.9 | 83.4–83.7 |
 3’UTR | 84.1–85.0 | 93.8–95.1 | 94.7–96.0 | 93.8–95.6 | 97.3–98.7 | 83.6–84.4 | 92.9–94.2 | 82.6–84.0 |
 Complete | 85.0–85.3 | 94.1–94.4 | 95.9–96.2 | 91.9–92.3 | 97.2–97.5 | 87.9–88.2 | 89.6–89.9 | 83.4–83.7 |
Amino acid | ||||||||
 Npro | 91.7–92.9 | 94.6–95.8 | 95.8–97.0 | 94.6–95.8 | 96.4–97.6 | 91.7–92.9 | 92.3–92.9 | 90.5–91.7 |
 C | 92.9–94.9 | 93.9–97.0 | 94.9–97.0 | 91.9–94.9 | 96.0–98.0 | 91.9–96.0 | 92.9–94.9 | 88.9–90.9 |
 Erns | 89.0–89.9 | 96.9–97.8 | 97.4–98.2 | 96.9–97.8 | 98.7–99.6 | 94.3–95.2 | 95.6–96.0 | 90.3–91.2 |
 E1 | 92.8–93.8 | 97.4–98.5 | 96.9–97.9 | 94.9–95.9 | 99.5–100.0 | 96.9–97.9 | 96.4–97.4 | 88.7–90.3 |
 E2 | 90.1–91.2 | 95.4–96.5 | 96.2–97.6 | 94.9–95.7 | 97.1–98.1 | 90.9–92.0 | 91.4–92.5 | 89.0–90.1 |
 P7 | 88.4–89.9 | 95.7–98.6 | 92.8–95.7 | 94.2–97.1 | 95.7–98.6 | 94.2–95.7 | 94.2–95.7 | 91.3–94.2 |
 NS2 | 89.7–90.6 | 95.6–96.3 | 97.4–98.0 | 95.8–96.3 | 97.2–98.0 | 94.7–95.2 | 93.4–94.1 | 86.9–87.7 |
 NS3 | 97.7–98.5 | 98.7–99.6 | 98.4–99.1 | 98.1–98.8 | 98.1–98.8 | 97.9–98.7 | 98.4–99.1 | 97.8–98.7 |
 NS4Aa | 98.4 | 100.0 | 98.4 | 95.2 | 100.0 | 96.8 | 100.0 | 95.2 |
 NS4B | 95.1–96.3 | 97.4–98.6 | 97.7–98.6 | 98.3–99.4 | 98.3–98.8 | 96.5–97.1 | 97.4–98.6 | 93.7–94.8 |
 NS5A | 87.5–89.0 | 95.6–96.6 | 96.2–97.4 | 93.2–94.8 | 96.4–97.2 | 87.1–88.0 | 93.2–94.0 | 86.3–87.3 |
 NS5B | 92.3–93.2 | 97.5–98.2 | 97.6–98.3 | 97.3–98.0 | 98.0–98.7 | 93.0–93.9 | 96.2–97.2 | 89.8–90.9 |