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Table 4 Detailed comparison of the full-length genomes of the 8 newly emerged sub-genotype 2.1d CSFVs to other CSFV representative isolates (%)

From: Complete genomic characteristics and pathogenic analysis of the newly emerged classical swine fever virus in China

 

Shimen (1.1)

Paderborn (2.1a)

HEBZ (2.1b)

HNSD-2012 (2.1c)

Zj0801 (2.1d)

CSFV39 (2.2)

Alfort (2.3)

TWN (3.4)

Nucleotides

 5’UTR

91.4–92.2

96.5–97.3

95.4–96.2

94.4–95.2

97.0–98.7

91.6–92.5

93.3–94.1

90.3–91.9

 Npro

87.1–88.1

94.0–94.8

94.2–95.4

92.1–92.7

96.8–98.0

88.3–89.1

88.3–88.9

84.1–85.3

 C

84.5–86.2

94.3–95.3

93.3–94.6

90.2–92.3

95.6–97.3

89.6–90.9

89.9–91.2

83.2–84.8

 Erns

84.1–85.3

93.2–94.6

96.5–97.1

92.1–93.1

97.7–98.2

89.4–89.7

89.6–90.5

82.4–8.4

 E1

84.4–85.3

93.8–94.7

96.4–97.3

91.3–92.1

97.6–98.5

90.3–91.5

88.4–89.6

81.4–82.1

 E2

83.5–84.3

93.5–94.3

95.5–96.5

90.1–91.0

96.6–97.1

87.0–87.5

86.9–87.8

82.0–82.4

 P7

79.7–81.6

90.8–93.2

95.2–97.1

91.8–94.2

95.7–98.6

87.4–89.4

88.4–90.3

82.6–85.5

 NS2

82.6–83.4

92.9–93.4

96.2–96.6

91.8–92.3

96.9–97.5

89.1–89.6

88.5–89.1

80.2–81.0

 NS3

86.4–87.0

94.6–95.1

95.7–96.1

92.8–93.6

97.1–97.4

90.3–91.0

90.8–91.7

85.4–86.1

 NS4A

86.2–87.8

94.7–96.3

94.2–95.8

91.0–92.6

97.9–98.9

87.8–89.4

87.8–89.4

82.5–94.1

 NS4B

85.8–86.5

92.8–93.6

95.0–95.8

90.1–91.1

96.6–97.8

89.3–90.0

88.4–89.1

83.1–84.1

 NS5A

83.7–84.3

93.6–94.0

96.2–96.7

90.7–91.3

97.0–97.3

83.8–84.3

90.6–90.9

82.5–82.9

 NS5B

84.7–85.3

94.9–95.3

95.8–96.4

92.5–93.2

97.5–97.8

85.2–85.7

89.5–89.9

83.4–83.7

 3’UTR

84.1–85.0

93.8–95.1

94.7–96.0

93.8–95.6

97.3–98.7

83.6–84.4

92.9–94.2

82.6–84.0

 Complete

85.0–85.3

94.1–94.4

95.9–96.2

91.9–92.3

97.2–97.5

87.9–88.2

89.6–89.9

83.4–83.7

Amino acid

 Npro

91.7–92.9

94.6–95.8

95.8–97.0

94.6–95.8

96.4–97.6

91.7–92.9

92.3–92.9

90.5–91.7

 C

92.9–94.9

93.9–97.0

94.9–97.0

91.9–94.9

96.0–98.0

91.9–96.0

92.9–94.9

88.9–90.9

 Erns

89.0–89.9

96.9–97.8

97.4–98.2

96.9–97.8

98.7–99.6

94.3–95.2

95.6–96.0

90.3–91.2

 E1

92.8–93.8

97.4–98.5

96.9–97.9

94.9–95.9

99.5–100.0

96.9–97.9

96.4–97.4

88.7–90.3

 E2

90.1–91.2

95.4–96.5

96.2–97.6

94.9–95.7

97.1–98.1

90.9–92.0

91.4–92.5

89.0–90.1

 P7

88.4–89.9

95.7–98.6

92.8–95.7

94.2–97.1

95.7–98.6

94.2–95.7

94.2–95.7

91.3–94.2

 NS2

89.7–90.6

95.6–96.3

97.4–98.0

95.8–96.3

97.2–98.0

94.7–95.2

93.4–94.1

86.9–87.7

 NS3

97.7–98.5

98.7–99.6

98.4–99.1

98.1–98.8

98.1–98.8

97.9–98.7

98.4–99.1

97.8–98.7

 NS4Aa

98.4

100.0

98.4

95.2

100.0

96.8

100.0

95.2

 NS4B

95.1–96.3

97.4–98.6

97.7–98.6

98.3–99.4

98.3–98.8

96.5–97.1

97.4–98.6

93.7–94.8

 NS5A

87.5–89.0

95.6–96.6

96.2–97.4

93.2–94.8

96.4–97.2

87.1–88.0

93.2–94.0

86.3–87.3

 NS5B

92.3–93.2

97.5–98.2

97.6–98.3

97.3–98.0

98.0–98.7

93.0–93.9

96.2–97.2

89.8–90.9

  1. aThe amino acid homology of NS4A protein of the 8 new isolates between each other was 100%