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Table 3 The reference CSFVs used in this study

From: Complete genomic characteristics and pathogenic analysis of the newly emerged classical swine fever virus in China

No.

Virus strain

Year

Origin

Genotype

Accession no.

1

Alfort 187

2010

Switzerland

1.1

X87939

2

Alfort A19

1997

France

1.1

U90951

3

Brescia

1998

Switzerland

1.1

AF091661

4

C-ZJ-2008

2008

China

1.1

HM175885

5

GZ-2009

2009

China

1.1

HQ380231

6

HCLV

1999

China

1.1

AF091507

7

HVRI

2006

China

1.1

AY805221

8

JL1(06)

2006

China

1.1

EU497410

9

Koslov

2010

Germany

1.1

HM237795

10

NG79–11

2014

India

1.1

KC503764

11

Shimen

1999

China

1.1

AF092448

12

VB-131

2014

India

1.1

KM262189

13

Bresciax 90

1990

Netherlands

1.2

M31768

14

RUCSFPLUM

2001

USA

1.2

AY578688

15

CSF0277

1997

Germany

2.1

JQ411566

16

96TD

2005

China

2.1a

AY554397

17

Paderborn

2001

Denmark

2.1a

AY072924

18

SXCDK

2009

China

2.1a

GQ923951

19

0406-CH

2005

China

2.1b

AY568569

20

CSF1048

2009

Germany

2.1b

HQ148063

21

GXWZ02

2003

China

2.1b

AY367767

22

HEBZ

2009

China

2.1b

GU592790

23

HuN23–2013

2013

China

2.1b

KP233071

24

SXYL2006

2006

China

2.1b

GQ122383

25

YC11WB

2011

Korea

2.1b

KC149990

26

GXF29/2013

2013

China

2.1c

KP233070

27

HNLY-2011

2011

China

2.1c

JX262391

28

HNSD-2012

2012

China

2.1c

JX218094

29

Heb52010

2010

China

2.1d

JQ268754

30

HLJZZ2014

2014

China

2.1d

KU375260

31

PC11WB

2011

Korea

2.1d

KC149991

32

Zj0801

2008

China

2.1d

FJ529205

33

39

2001

China

2.2

AF407339

34

LAL-290

2012

India

2.2

KC851953

35

Alfort/Tuebingen

1989

Germany

2.3

J04358

36

Borken

2006

Germany

2.3

GU233731

37

Euskirchen

2005

Germany

2.3

GU233732

38

Hennef

2009

Germany

2.3

GU233733

39

Jambul

2007

Bulgaria

2.3

HQ148062

40

Novska

2002

Croatia

2.3

HQ148061

41

Roesrath

2009

Germany

2.3

GU233734

42

Sp01

2001

Spain

2.3

FJ265020

43

Uelzen

2004

Germany

2.3

GU324242

44

JJ9811

1998

Korea

3.2

KF669877

45

P97

2006

3.4

L49347

46

TWN

1994

China

3.4

AY646427