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Table 3 The reference CSFVs used in this study

From: Complete genomic characteristics and pathogenic analysis of the newly emerged classical swine fever virus in China

No. Virus strain Year Origin Genotype Accession no.
1 Alfort 187 2010 Switzerland 1.1 X87939
2 Alfort A19 1997 France 1.1 U90951
3 Brescia 1998 Switzerland 1.1 AF091661
4 C-ZJ-2008 2008 China 1.1 HM175885
5 GZ-2009 2009 China 1.1 HQ380231
6 HCLV 1999 China 1.1 AF091507
7 HVRI 2006 China 1.1 AY805221
8 JL1(06) 2006 China 1.1 EU497410
9 Koslov 2010 Germany 1.1 HM237795
10 NG79–11 2014 India 1.1 KC503764
11 Shimen 1999 China 1.1 AF092448
12 VB-131 2014 India 1.1 KM262189
13 Bresciax 90 1990 Netherlands 1.2 M31768
14 RUCSFPLUM 2001 USA 1.2 AY578688
15 CSF0277 1997 Germany 2.1 JQ411566
16 96TD 2005 China 2.1a AY554397
17 Paderborn 2001 Denmark 2.1a AY072924
18 SXCDK 2009 China 2.1a GQ923951
19 0406-CH 2005 China 2.1b AY568569
20 CSF1048 2009 Germany 2.1b HQ148063
21 GXWZ02 2003 China 2.1b AY367767
22 HEBZ 2009 China 2.1b GU592790
23 HuN23–2013 2013 China 2.1b KP233071
24 SXYL2006 2006 China 2.1b GQ122383
25 YC11WB 2011 Korea 2.1b KC149990
26 GXF29/2013 2013 China 2.1c KP233070
27 HNLY-2011 2011 China 2.1c JX262391
28 HNSD-2012 2012 China 2.1c JX218094
29 Heb52010 2010 China 2.1d JQ268754
30 HLJZZ2014 2014 China 2.1d KU375260
31 PC11WB 2011 Korea 2.1d KC149991
32 Zj0801 2008 China 2.1d FJ529205
33 39 2001 China 2.2 AF407339
34 LAL-290 2012 India 2.2 KC851953
35 Alfort/Tuebingen 1989 Germany 2.3 J04358
36 Borken 2006 Germany 2.3 GU233731
37 Euskirchen 2005 Germany 2.3 GU233732
38 Hennef 2009 Germany 2.3 GU233733
39 Jambul 2007 Bulgaria 2.3 HQ148062
40 Novska 2002 Croatia 2.3 HQ148061
41 Roesrath 2009 Germany 2.3 GU233734
42 Sp01 2001 Spain 2.3 FJ265020
43 Uelzen 2004 Germany 2.3 GU324242
44 JJ9811 1998 Korea 3.2 KF669877
45 P97 2006 3.4 L49347
46 TWN 1994 China 3.4 AY646427