Skip to main content

Table 2 The differences (D) or similarities (S) between the known viral miRNAs from CHv and VAc strain (miRBase)

From: Virulent duck enteritis virus infected DEF cells generate a unique pattern of viral microRNAs and a novel set of host microRNAs

Name

CHv-Seq(5′-3′)

Vac-Seq(5′-3′)

Seq(S/D)

Seed Seq(S/D)a

dev-miR-D1-3p

UCCUCUUGCGCGAUCCCCACGU

UCCUCUUGCGCGAUCCCCACGU

S

S

dev-miR-D1-5p

UUGGGAAUGGCGGAAGAGCAGACU

UUGGGAAUGGCGGAAGAGCAGACU

S

S

dev-miR-D3-3p

AUUGUUGCGUUUGGUGGUUUGUG

AUUGUUGCGUUUGGUGGUUUGUG

S

S

dev-miR-D4-3p

UUGUCGGAUUGGUAUGCUUU

UUAAUUGUCGGAUUGGUAUGCUUUUU

D

D

dev-miR-D5-5p

UGUCAUCUGCGACGUCCUGCUCG

UGUCAUCUGCGACGUCCUGCUCG

S

S

dev-miR-D6-3p

GUCAGAGUGUCGGUGAGUCGA

GUCAGAGUGUCGGUGAGUCGACG

D

S

dev-miR-D6-5p

UGACACACCACCAUUCUGGCCG

UGACACACCACCAUUCUGGCCG

S

S

dev-miR-D7-5p

CGUAGCGGCGUAUAAUGGUUU

UUCGUAGCGGCGUAUAAUGGUUU

D

D

dev-miR-D8-3p

UACAGUUUCGUUGGGCGGUUU

UACAGUUUCGUUGGGCGGUUUC

D

S

dev-miR-D8-5p

UGCCUCCCGAUUAAACUAUACG

UGCCUCCCGAUUAAACUAUACGC

D

S

dev-miR-D9-3p

CAGUCCAGAAUGUUCAAAC

CAGUCCAGAAUGUUCAAACG

D

S

dev-miR-D9-5p

CGUUUGAACGUUCUGUACUGCC

CGUUUGAACGUUCUGUACUGCCC

D

S

dev-miR-D11-3p

AAAAGGGCAGCCUGGGCU

GCAAAAGGGCAGCCUGGGCUCUAU

D

D

dev-miR-D12–3p

CUCCGCGGUGAGGUCCCAGAA

CUCCGCGGUGAGGUCCCAGAAA

D

S

dev-miR-D12–5p

UACCUGGGACAGAACCGCGGCCG

UACCUGGGACAGAACCGCGGCCG

S

S

dev-miR-D13-5p

CGUGGGGUAGAACGCAUG

CCCGUGGGGUAGAACGCAU

D

D

dev-miR-D14-3p

GUUAUGUCUGGUUAUUAUGUUUU

GCGUUAUGUCUGGUUAUUAUGUUUUU

D

D

dev-miR-D15-3p

CGAGCGUGGGCAAGGUACC

CGAGCGUGGGCAAGGUACCAG

D

S

dev-miR-D16-3p

CUAAACACCAACGGAUGAACGU

CUAAACACCAACGGAUGAACGU

S

S

dev-miR-D17-3p

UCCGACCGCUCGCCUUCGAGGC

GACCGCUCGCCUUCGAGGCCACC

D

D

dev-miR-D17-5p

UGCAACGAAGGCGAACGGUUGA

UGCAACGAAGGCGAACGGUUG

D

S

dev-miR-D18-3p

CCAUCCCCUCCGCUGGCCCCAA

CCAUCCCCUCCGCUGGCCCCAA

S

S

dev-miR-D18-5p

GGGAUCGGUGAGGGGGGAUUGUG

GGGAUCGGUGAGGGGGGAUUGUG

S

S

dev-miR-D19-5p

AUGAAAGAGCGGUGCCUUU

GAUGAAAGAGCGGUGCCUUU

D

D

dev-miR-D20-5p

AAUGUCGGCCAGCCUCUCCGCUU

AAUGUCGGCCAGCCUCUCCGCUU

S

S

dev-miR-D21-3p

AUCCAUGCAAUCUCCAAACAAC

AUCCAUGCAAUCUCCAAACAACC

D

S

dev-miR-D21-5p

GGUUUGGAGACAGCUGCGGUGG

UGGUUUGGAGACAGCUGCGGUGGU

D

D

dev-miR-D22–3p

GUCACACAAGGCGGCUAGCAGG

GUCACACAAGGCGGCUAGCAGG

S

S

dev-miR-D22-5p

UUACCCGCCCAUGCGUGACUGCC

UUACCCGCCCAUGCGUGACUGCC

S

S

dev-miR-D23-3p

CGAACCGUCACAGUCUGCAGA

CGCGAACCGUCACAGUCUGCAG

D

D

dev-miR-D24-3p

AUUGGCUUCAGAGUGCGAACGC

AUUGGCUUCAGAGUGCGAACGC

S

S

dev-miR-D2–3pb

 

AUAAGGCGAUCCGUGGUUU

  

dev-miR-D10-3pb

 

CUUUGAGUUCUAGCCCGUCUAUC

  
  1. aSeed sequence of miRNAs were present in italic font
  2. bThe dev-miR-D2–3p and dev-miR-D10-3p were not detected in CHv-infected DEF cells