Table 1 Summary of sequence and genomic position of CHv-encoded miRNAs
Name | Sequence(5′-3′) | Length | Reads | Position and Strand |
|---|---|---|---|---|
dev-miR-D1-5p | UUGGGAAUGGCGGAAGAGCAGACU | 24 | 628 | 1328:1351 (−) |
dev-miR-D1-3p | UCCUCUUGCGCGAUCCCCACGU | 22 | 479 | 1294:1315 (−) |
dev-miR-D3-3p | AUUGUUGCGUUUGGUGGUUUGUG | 23 | 63 | 17,761:17783 (+) |
dev-miR-D4-3p | UUGUCGGAUUGGUAUGCUUU | 20 | 4 | 25,758:25777 (−) |
dev-miR-D5-5p | UGUCAUCUGCGACGUCCUGCUCG | 23 | 4157 | 52,654:52676 (−) |
dev-miR-D6-5p | UGACACACCACCAUUCUGGCCG | 22 | 904 | 53,728:53749 (−) |
dev-miR-D6-3p | GUCAGAGUGUCGGUGAGUCGA | 21 | 1018 | 53,695:53715 (−) |
dev-miR-D7-5p | CGUAGCGGCGUAUAAUGGUUU | 21 | 20 | 68,655:68675 (+) |
dev-miR-D8-5p | UGCCUCCCGAUUAAACUAUACG | 22 | 12 | 72,347:72368 (−) |
dev-miR-D8-3p | UACAGUUUCGUUGGGCGGUUU | 21 | 18,987 | 72,309:72329 (−) |
dev-miR-D9-5p | CGUUUGAACGUUCUGUACUGCC | 22 | 12,713 | 72,498:72519 (−) |
dev-miR-D9-3p | CAGUCCAGAAUGUUCAAAC | 19 | 1680 | 72,458:72476 (−) |
dev-miR-D11-3p | AAAAGGGCAGCCUGGGCU | 18 | 1 | 75,095:75112 (+) |
dev-miR-D12–5p | UACCUGGGACAGAACCGCGGCCG | 23 | 15,960 | 79,299:79321 (−) |
dev-miR-D12–3p | CUCCGCGGUGAGGUCCCAGAA | 21 | 870 | 79,263:79283 (−) |
dev-miR-D13-5p | CGUGGGGUAGAACGCAUG | 18 | 14 | 105,693:105710 (−) |
dev-miR-D14-3p | GUUAUGUCUGGUUAUUAUGUUUU | 23 | 1 | 107,259:107281 (−) |
dev-miR-D15-3p | CGAGCGUGGGCAAGGUACC | 19 | 700 | 112,570:112588 (−) |
dev-miR-D16-3p | CUAAACACCAACGGAUGAACGU | 22 | 14,930 | 112,727:112748 (−) |
dev-miR-D17-5p | UGCAACGAAGGCGAACGGUUGA | 22 | 5191 | 117,132:117153 (−) |
dev-miR-D17-3p | UCCGACCGCUCGCCUUCGAGGC | 22 | 3 | 117,098:117119 (−) |
dev-miR-D18-5p | GGGAUCGGUGAGGGGGGAUUGUG | 23 | 2676 | 119,157:119179 (−) |
dev-miR-D18-3p | CCAUCCCCUCCGCUGGCCCCAA | 22 | 1819 | 119,119:119140 (−) |
dev-miR-D19-5p | AUGAAAGAGCGGUGCCUUU | 19 | 771 | 119,180:119198 (−) |
dev-miR-D20-5p | AAUGUCGGCCAGCCUCUCCGCUU | 23 | 11,422 | 125,008:125030 (+)/160,535:160557(−) |
dev-miR-D21-5p | GGUUUGGAGACAGCUGCGGUGG | 22 | 651 | 125,178:125199 (+)/160,366:160387(−) |
dev-miR-D21-3p | AUCCAUGCAAUCUCCAAACAAC | 22 | 347 | 125,218:125239 (+)/160,326:160347(−) |
dev-miR-D22-5p | UUACCCGCCCAUGCGUGACUGCC | 23 | 2201 | 126,494:126516 (+)/159,049:159071(−) |
dev-miR-D22–3p | GUCACACAAGGCGGCUAGCAGG | 22 | 11 | 126,532:126553 (+)/159,012:159033(−) |
dev-miR-D23-3p | CGAACCGUCACAGUCUGCAGA | 21 | 3322 | 128,060:128080 (+)/157,485:157505(−) |
dev-miR-D24-3p | AUUGGCUUCAGAGUGCGAACGC | 22 | 21 | 134,514:134535 (+)/151,030:151051(−) |
dev-miR-D25-5p | UGUGGGGACCGUGUAUGAGAUGU | 23 | 145 | 696:718 (−) |
dev-miR-D26-5p | AUCGAAGCGAGGCGAGAUAACCU | 23 | 12 | 26,368:26390 (−) |
dev-miR-D26-3p | GUUCUCCCUUGCUUUGACAU | 20 | 12 | 26,329:26348 (−) |
dev-miR-D27-5P | AUCCUGGACCGAUAUAUGGACA | 22 | 197 | 73,467:73488 (−) |
dev-miR-D28-3P | CUGGUGGGAAGAAUUUUCGC | 20 | 149 | 77,133:77152 (−) |
dev-miR-D29-5p | AACAUAUCUCUUGACCUCUGGCGU | 24 | 2323 | 87,039:87062 (−) |
dev-miR-D30-3P | ACUGGCUGGGGUGCAACUAAGU | 22 | 9 | 103,962:103983 (−) |
dev-miR-D31-3p | AUCACGGGGUGUUAGAUGAACC | 22 | 13,664 | 123,167:123188 (+) |