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Table 1 Samples selected for next generation sequencing

From: Efficacy of live attenuated porcine reproductive and respiratory syndrome virus 2 strains to protect pigs from challenge with a heterologous Vietnamese PRRSV 2 field strain

Name

Sample identity

Sample type

RT-qPCR cq

AGES 1048

PRRSV 2 live vaccine

vaccine

19

AGES 760

HP PRRSV 2 challenge strain

cell culture

20

1171–04

day 21 after vaccination, ear tag 104

serum

29

1171–06

day 21 after vaccination, ear tag 106

serum

26

1302–01

day 3 after challenge, ear tag 101

serum

32

1308–05

day 7 after challenge, ear tag 106

serum

30

1414-3c

day 28 after challenge, ear tag 104

tonsillar scraping

32

1414-5c

day 28 after challenge, ear tag 106

tonsillar scraping

30

  1. All of the selected piglets were pre-vaccinated with an experimental PRRSV 2 live vaccine