Target species | Primer | Sequence (5′-3′) | Reference |
---|---|---|---|
Total bacteria | FP 16S | GGTAGTCYAYGCMSTAAACG | [53] |
RP 16S | GACARCCATGCASCACCTG | Â | |
Escherichia coli | E. coli F | GTTAATACCTTTGCTCATTGA | [54] |
E. coli R | ACCAGGGTATCTAATCC TGTT | Â | |
Bifidobacterium genus | g-Bifid-F | CTCCTGGAAACGGGTGG | [55] |
g-Bifid-R | GGTGTTCTTCCCGATATCTACA | Â | |
Lactobacillus genus | Lab-0159 | GGAAACAG(A/G)TGCTAATACCG | [56] |
Univ-0515 | ATCGTATTACCGCGGCTGCTGGCA | Â | |
Enterococcus genus | EnteroF | CCCTTATTGTTAGTTGCCATCATT | [57] |
EnteroR | ACTCGTTGTACTTCCCATTGT | Â | |
Clostridium perfringens | CP1 | AAAGATGGCATCATCATTCAAC | [58] |
CP2 | TACCGTCATTATCTTCCCCAAA | Â |