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Table 1 Gene constellation of influenza A viruses of swine used in this study

From: Experimental infection of pigs with H1 and H3 influenza A viruses of swine by using intranasal nebulization

Virus

Abbreviation

Subtype

H1 cladec

Genetic origin

Isolate ID or accession no.d

HA

NA

PB2

PB1

PA

NP

M

NS

 

A/swine/Yamagata/11/2010a

Yam10

H1N1

1A.3.3.2

Pdm

Pdm

Pdm

Pdm

Pdm

Pdm

Pdm

Pdm

EPI_ISL_237800

A/swine/Kagoshima/30/2015a

Kag15

H1N1

1A.3.3.2

Pdm

Pdm

Pdm

Pdm

Pdm

Pdm

Pdm

Pdm

EPI_ISL_237923

A/swine/Chiba/1-11/2015a

Chi15

H1N1

1A.1

Cla

Pdm

Pdm

Pdm

Pdm

Cla

Pdm

Pdm

EPI_ISL_221941

A/swine/Tochigi/1/2008a

Toc08

H1N2

1A.1-like

Cla

Hu

Cla

Cla

Cla

Cla

Cla

Cla

EPI_ISL_237796

A/swine/Tochigi/1/2012a

Toc12

H1N2

1A.1-like

Cla

Hu

Pdm

Pdm

Pdm

Pdm

Pdm

Pdm

EPI_ISL_237798

A/swine/Nagano/2000a

Nag00

H3N2

N/A

Hu

Hu

Hu

Hu

Hu

Hu

Hu

Hu

EPI_ISL_237795

A/swine/Miyazaki/2/2013a

Miy13

H3N2

N/A

Hu

Hu

Pdm

Pdm

Pdm

Pdm

Pdm

Pdm

EPI_ISL_237794

A/swine/Yokohama/aq114/2011

Yok11

H3N2

N/A

TR

TR

TR

TR

TR

TR

TR

TR

AB741020-AB741027

A/swine/Minnesota/01146/2006b

Min06

H3N2

N/A

TR

TR

TR

TR

TR

TR

TR

TR

CY099035-CY099042

  1. Cla classical swine lineage, Hu seasonal human-like lineage, TR North American triple-reassortant lineage
  2. aComplete genomic sequence was obtained during this study
  3. bKindly provided by Dr. Amy L Vincent (US Department of Agriculture, Ames, IA, USA)
  4. cH1 clade was obtained by Swine H1 Clade Classification Tool [https://www.fludb.org/]. N/A not applicable
  5. dIsolate IDs from GISAID; accession numbers from GenBank