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Table 2 Primers used in this study

From: Molecular characterization of US-like and Asian non-S INDEL strains of porcine epidemic diarrhea virus (PEDV) that circulated in Japan during 2013–2016 and PEDVs collected from recurrent outbreaks

Primer

Nucleotide sequence (5′-3′)

Target gene (fragment size, bp)

Positiona

FS-F

TCCATTAGTGATGTTGTGTTAGG

Full-length S gene (4371)

20,530–24,900

FS-R

ACTACATTRAGCTCCAACTC

  

fMF

CTTGTCACCGGTTGTGTAATAG

Full-length M gene (826)

25,567–26,392

fMR

CTGACAGAAGCCATAAAGTTTCTG

  

fNF

ACTGGTTGGGCTTTCTATGTC

Full-length N gene (1507)

26,263–27,769

fNR

CTCAGTAATAACAGTGTAATGGCAC

  
  1. aNumbers correspond to positions within the Colorado/USA/2013 genome