No. of isolates | stx subtypes and virulence genes | Pathotype (No. Source) | Phylo-group (No. Source) | ERIC-types (No. Source) with 65% Dice similarity | ||||||
---|---|---|---|---|---|---|---|---|---|---|
stx1a | stx1c | stx2a | stx2b | stx2c | stx2d | eae | ||||
20 | + | + | Â | Â | Â | Â | Â | STEC (16F, 4M) | B1(16F, 2M), A(1M), U(1M) | II(1M), IV(6F), V(2F, 1M), VI(2F), VIII(4F, 1M), IX(1M), X(2F) |
18 | Â | + | Â | Â | Â | Â | Â | STEC (13F, 5M) | B1(9F, 4M), A(4F, 1M) | I(1M), II(1M), IV(5F, 1M), VI(3F), VIII(2F, 1M), X(3F, 1M) |
3 | Â | + | Â | Â | + | + | Â | STEC (3F) | B1(3F) | VII(1F), VIII(1F), X(1F) |
3 | Â | + | + | Â | + | + | Â | STEC (2F, 1F) | B1(2F), U(1F) | IV(1F), VI(1F), X(1F) |
2 | + | + | + | Â | Â | + | Â | STEC (2M) | B1(2M) | V(1M), VIII(1M) |
2 | + | Â | Â | Â | Â | Â | Â | STEC (2F) | B1(2F) | II(1F), III(1F) |
2 | Â | + | Â | Â | Â | Â | + | EHEC (1F, 1M) | B1(1F), U(1M) | IV(1F), VIII(1M) |
1 | + | + | Â | Â | Â | Â | + | EHEC (1F) | B1(1F) | IV(1F) |
1 | Â | + | Â | Â | Â | + | Â | STEC (1M) | B1(1M) | VII(1M) |
1 | + | + | Â | Â | + | + | Â | STEC (1F) | B1(1F) | VIII(1F) |
1 | + | + | + | Â | + | Â | Â | STEC (1M) | B1(1M) | IX(1M) |
1 | + | + | + | Â | + | + | Â | STEC(1F) | B1(1F) | VIII(1F) |
1 a | + | + | + | Â | + | + | Â | STEC (1F) | A(1F) | X(1F) |
1 a | Â | Â | + | + | Â | Â | Â | STEC (1F) | B1(1F) | IV(1F) |
Total Source (43F, 14M) | 29 | 54 | 9 | 1 | 10 | 12 | 3 | STEC (41F, 13M), EHEC (2F, 1M) | B1(37F, 10M), A(5F, 2M), U(1F, 2M) | I(1M), II(1F, 2M), III(1F), IV(15F, 1M), V(2F, 2M), VI(6F), VII(1M, 1F), VIII(9F, 4M), IX(2M), X(8F, 1M) |