Table 3 Genotype frequencies for LOC426217 variants in normal Appenzeller Barthuhn chickens compared to animals with crossed beaks
Position in the LOC426217 cDNAa and on chromosome 25 (Gallus_gallus-5.0)b | Genotypec, d | χ2-valuee | p-value | corrected p-value | |||
|---|---|---|---|---|---|---|---|
AA | AB | BB | |||||
c.-62G > T; 5’UTR g.2013308C > A | control case | 7 0 | 26 6 | 81 46 | 6.960 | 0.029 | 0.086 |
c.16C > G; p.Leu6Val g.2013231G > C | control case | 113 52 | 1 0 | 0 0 | none | 1 | 1 |
c.24 T > C; synonymous g.2013223A > G | control case | 17 5 | 56 21 | 41 26 | 3.087 | 0.214 | 0.320 |
c.36G > C; synonymous g.2013211C > G | control case | 35 10 | 59 17 | 20 25 | 16.849 | < 0.001 | 0.003 |
c.48A > G; synonymous g.2013199 T > C | control case | 82 46 | 26 5 | 7 1 | 5.538 | 0.063 | 0.103 |
c.49G > A; p.Ala17Thrr g.2013198C > T | control case | 111 52 | 3 0 | 0 0 | none | 0.553 | 0.603 |
c.96C > T; synonymous g.2013151G > A | control case | 82 47 | 25 6 | 7 0 | 6.762 | 0.034 | 0.078 |
c.222 T > C; synonymous g.2013025A > G | control case | 17 5 | 56 22 | 41 26 | 2.819 | 0.244 | 0.326 |
c.252A > G; synonymous g.2012995 T > C | control case | 82 48 | 25 5 | 7 0 | 8.013 | 0.018 | 0.068 |
c.256_258delCTGinsTAT; p.Leu86Ile g.2012991_2012989delGACinsATA | control case | 82 47 | 25 6 | 7 0 | 6.762 | 0.034 | 0.078 |
c.289G > T; p.Gly97Cys g.2012958C > A | control case | 114 52 | 0 1 | 0 0 | none | 0.317 | 0.381 |
c.363 T > C; synonymous g.2012884A > G | control case | 21 25 | 58 18 | 35 10 | 15.011 | < 0.001 | 0.003 |