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Table 5 List of bioinformatics analysis software used in this study

From: Molecular cloning and characterization of the family of feline leucine-rich glioma-inactivated (LGI) genes, and mutational analysis in familial spontaneous epileptic cats

Bioinformatics analysis software

URL

Prediction purpose

ORF finder

https://www.ncbi.nlm.nih.gov/orffinder/

Predict ORF

ProtParam

http://web.expasy.org/protparam/

Basic properties

PsiPred

http://bioinf.cs.ucl.ac.uk/psipred/

Secondary structures

NetOGlyc 4.0

http://www.cbs.dtu.dk/services/NetOGlyc/

O-glycosylation sites

NetNGlyc 1.0

http://www.cbs.dtu.dk/services/NetNGlyc/

N-glycosylation sites

NetPhos 3.1

http://www.cbs.dtu.dk/services/NetPhos/

Phosphorylation sites

TMHMM Server v. 2.0

http://www.cbs.dtu.dk/services/TMHMM/

Transmembrane domains

SignalP 4.1

http://www.cbs.dtu.dk/services/SignalP/

Signal peptides

SCRATCH

http://scratch.proteomics.ics.uci.edu/

Disulfide bonds

PSORT II

https://psort.hgc.jp/form2.html

Sub cellular distribution

LALIGN

http://www.ch.embnet.org/software/LALIGN_form.html

Pairwise alignments

SMART

http://smart.embl.de/

Structural domains

STRING 10.0

http://string-db.org/

Proteins interaction

SIFT

http://sift.bii.a-star.edu.sg/

Predicting pathogenicity

PP2

http://genetics.bwh.harvard.edu/pph2/

Predicting pathogenicity

PROVEAN

http://provean.jcvi.org

Predicting pathogenicity