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Table 5 List of bioinformatics analysis software used in this study

From: Molecular cloning and characterization of the family of feline leucine-rich glioma-inactivated (LGI) genes, and mutational analysis in familial spontaneous epileptic cats

Bioinformatics analysis software URL Prediction purpose
ORF finder https://www.ncbi.nlm.nih.gov/orffinder/ Predict ORF
ProtParam http://web.expasy.org/protparam/ Basic properties
PsiPred http://bioinf.cs.ucl.ac.uk/psipred/ Secondary structures
NetOGlyc 4.0 http://www.cbs.dtu.dk/services/NetOGlyc/ O-glycosylation sites
NetNGlyc 1.0 http://www.cbs.dtu.dk/services/NetNGlyc/ N-glycosylation sites
NetPhos 3.1 http://www.cbs.dtu.dk/services/NetPhos/ Phosphorylation sites
TMHMM Server v. 2.0 http://www.cbs.dtu.dk/services/TMHMM/ Transmembrane domains
SignalP 4.1 http://www.cbs.dtu.dk/services/SignalP/ Signal peptides
SCRATCH http://scratch.proteomics.ics.uci.edu/ Disulfide bonds
PSORT II https://psort.hgc.jp/form2.html Sub cellular distribution
LALIGN http://www.ch.embnet.org/software/LALIGN_form.html Pairwise alignments
SMART http://smart.embl.de/ Structural domains
STRING 10.0 http://string-db.org/ Proteins interaction
SIFT http://sift.bii.a-star.edu.sg/ Predicting pathogenicity
PP2 http://genetics.bwh.harvard.edu/pph2/ Predicting pathogenicity
PROVEAN http://provean.jcvi.org Predicting pathogenicity