Whole genome sequence and a phylogenetic analysis of the G8P[14] group A rotavirus strain from roe deer

BMC Veterinary Research

Table 1 Genome genotype constellation of the 11 segments of RVA/Roe deer-wt/SLO/D110–15/G8P[14], the closest nucleotide identities from GenBank and identities shared with Slovenian RVA/Hu-wt/SVN/SI-2987/09/G8P[14] strain

Gene	Strain SLO/D110–15		Strains in the GenBank with the closest nucleotide identity
	Genotype	Accession no.	Strain	Accession no.	Nt identity (%)	Host
VP7	G8	KY426808	OVR762	EF554153	96.9	Ovine
VP7	G8	KY426808	SI-2987/09	KY972333	85.7^a	Human
VP4	P[14]	KY426812	Tottori-SG	AB853893	94.7	Bovine
VP4	P[14]	KY426812	SI-2987/09	KY972331	83.7^a	Human
VP6	I2	KY426813	Tottori-SG	AB853894	94.1	Bovine
VP6	I2	KY426813	SI-2987/09	KY972332	87.0^a	Human
VP1	R2	KY426809	B10925	EF554115	94.8	Human
VP1	R2	KY426809	SI-2987/09	KY972328	85.5^a	Human
VP2	C2	KY426810	182-02	KU508381	92.3	Human
VP2	C2	KY426810	SI-2987/09	KY972329	95.4^a	Human
VP3	M2	KY426811	SI-R56	JX094030	98.6	Human
VP3	M2	KY426811	SI-2987/09	KY972330	91.1^a	Human
NSP1	A3	KY426803	NCDV	GU808570	97.2	Bovine
NSP1	A3	KY426803	SI-2987/09	KY972323	99.7^a	Human
NSP2	N2	KY426804	1604	JN831216	96.6	Bovine
NSP2	N2	KY426804	SI-2987/09	KY972324	99.3^a	Human
NSP3	T6	KY426805	UCD	GQ428138	97.8	Giraffe
NSP3	T6	KY426805	SI-2987/09	KY972325	93.1^a	Human
NSP4	E2	KY426806	BEF06018	KU128901	97.8	Human
NSP4	E2	KY426806	SI-2987/09	KY972326	97.0^a	Human
NSP5	H3	KY426813	BEF06018	KU128902	99.7	Human
NSP5	H3	KY426813	SI-2987/09	KY972327	95.1^a	Human

^athe identity scores were calculated with the partial nucleotide sequences of the rotavirus strain SI-2987/09

ISSN: 1746-6148