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Table 2 Cattle identification, sample types and 24-locus variable number of tandem repeat profiles of M. tuberculosis strains isolated in the Eastern Province of South Africa

From: Mycobacterium tuberculosis infection in cattle from the Eastern Cape Province of South Africa

Locus name

MIRU 04

MIRU 26

MIRU 40

MIRU 10

MIRU 16

MIRU 31

VNTR 42

VNTR 43

ETR A

VNTR 47

VNTR 52

VNTR 53

QUB 11b

VNTR 1955

QUB 26

MIRU 02

MIRU 23

MIRU 39

MIRU 20

MIRU 24

MIRU 27

VNTR 46

VNTR 48

VNTR 49

Animal ID

Sample type

Farm

Copy number

3

8

3

3

4

5

1

2

n/a

2

4

n/a

2

4

8

2

5

3

n/a

1

3

3

2

3

25545

(TB 7000)

Lung

Farm 1

3

5

1

3

1

5

1

4

2

1

3

2

4

3

n/a

2

6

2

n/a

1

2

3

1

3

84750367

(TB 7046A)

Prescapsular LN

Farm 2

  1. n/a not available (PCR was not successful), LN Lymph node