Isolate name | sub/genotype | Cycle threshold (Ct) valuesb | ||
---|---|---|---|---|
Matrix gene testc | Fusion-specific gene testd | New pigeon-specific fusion gene primers and probe (annealing temperature 56 °C) | ||
pigeon/Egypt/Giza/11/2015 | VI g | 16.12 | 0 | 13.55 |
pigeon/Egypt/Helwan/44/2015 | VI g | 12.07 | 0 | 20.27 |
pigeon/Egypt/Qena/56/2015 | VI g | 12.27 | 0 | 15.92 |
pigeon/Egypt/El Fayom/73/2015 | VI g | 12.11 | 0 | 19.97 |
pigeon/Egypt/El Fayom /79/2015 | VI g | 14.72 | 0 | 15.57 |
pigeon/Egypt/El Fayom/84/2015 | VI g | 12.42 | 0 | 14.34 |
pigeon/Ukraine/Kharkiv/2301/2013 | VI g | 15.53 | 0 | 18.4 |
pigeon/Ukraine/Doneck/3/2007 | VI g | 12.11 | 0 | 21.62 |
pigeon/Pakistan/ Lahore/21A/2015 | VI m | 12.03 | 23.35 | 19.66 |
pigeon/Pakistan/Lahore/22A/2015 | VI m | 12.99 | 26.92 | 22.45 |
pigeon/Pakistan/Lahore/25A/2015 | VI m | 16.38 | 26.49 | 17.81 |
chicken/Bulgaria/Mokresh/1982 | VI | 13.72 | 24.25 | 21.83 |
chicken/Bulgaria/Dolnolinevo/1992 | VI c | 12.94 | 18.3 | 15.54 |
chicken/South Korea/9358GG/1993 | VI c | 12.31 | 26.61 | 24.84 |
quail/South Korea /88Â M/1988 | VI c | 12.08 | 16.51 | 24.52 |
hawk/Mexico 663-ZM03/2008 (KC808489.1) | II | 18.52 | 0 | 38.85 |
chicken/Belize/4224–3/08 (JN872163.1) | V b | 16.23 | 18.95 | 28.02 |
parrot/Israel/2012/841 (KF792020.1) | VI a | 16.63 | 26.41 | 32.42 |
chicken/KY-Israel/2013/50 (KF792019.1) | VII i | 13.35 | 26.29 | 33.29 |
poultry/Peru/1918–03/2008 (JN800306.1) | XII | 13.16 | 20.31 | 35.68 |
NG-707/GM.GMM.17-18Â T (KC568207.1) | XIV b | 12.29 | 17.07 | 32.05 |
chicken/DominicanRepublic499–31/2008 (JX119193.1) | XVI | 17.44 | 17.92 | 0 |
NG-694/YB.GSH1.9-10C (KC568215.1) | XVII a | 13.67 | 17.18 | 29.33 |