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Table 1 Selected virulence-associated genes and their corresponding primer pairs

From: OmpA protein sequence-based typing and virulence-associated gene profiles of Pasteurella multocida isolates associated with bovine haemorrhagic septicaemia and porcine pneumonic pasteurellosis in Thailand

No

Gene symbol

Function

Primer name

Primer sequence (5′ ➔ 3′)

Product size (kb)

References

1

exbB

Energy transport for iron acquisition

exbB-F

exbB-R

TTGGCTTGTGATTGAACGC

TGCAGGAATGGCGACTAAA

283

[18]

2

exbD

Energy transport for iron acquisition

exbD-F

exbD-R

CGTTCTGATTACAGCCTCTT

AACGAAATCTTGGAAACTGG

247

[18]

3

fimA

Adherence and colonization

fimA-F

fimA-R

CCATCGGATCTAAACGACCTA

AGTATTAGTTCCTGCGGGTG

806

[18]

4

fur

Iron-dependent regulation

fur-F

fur-R

GTTTACCGTGTATTAGACCA

CATTACTACATTTGCCATAC

244

[18]

5

hgbA

Iron acquisition

hgbA-F

hgbA-R

TCAACGGCAGATAATCAGGG

GCGGGAATGCTGAAGATAAG

268

[18]

6

hgbB

Iron acquisition

hgbB-F

hgbB-R

ACCGCGTTGGAATTATGATTG

CATTGAGTACGGCTTGACAT

768

[33]

7

hsf1

Adherence and colonization

hsf1-F

hsf1-R

TTGAGTCGGCTGTAGAGTTCG

ACTCTTTAGCAGTGGGGACAACCTC

654

[18]

8

hsf2

Adherence and colonization

hsf2-F

hsf2-R

ACCGCAACCATGCTCTTAC

TGACTGACATCGGCGGTAC

430

[18]

9

nanB

Nutrition acquisition

nanB-F

nanB-R

GTCCTATAAAGTGACGCCGA

ACAGCAAAGGAAGACTGTCC

586

[33]

10

nanH

Nutrition acquisition

nanH-F

nanH-R

GTGGGAACGGGAATTGTGA

ACATGCCAAGTTTGCCCTA

287

[18]

11

oma87

Outer membrane protein assembly and insertion

oma87-F

oma87-R

GGCAGCGAGCAACAGATAACG

TGTTCGTCAAATGTCGGGTGA

833

[18]

12

ompA

Outer membrane biosynthesis and integrity

ompA-F

ompA-R

CGCATAGCACTCAAGTTTCTCC

CATAAACAGATTGACCGAAACG

202

[18]

13

ompH

Outer membrane general transport

ompH-F

ompH-R

CGCGTATGAAGGTTTAGGT

TTTAGATTGTGCGTAGTCAAC

452

[18, 33]

14

pfhA

Adherence and colonization

pfhA-F

pfhA-R

AGCTGATCAAGTGGTGAAC

TGGTACATTGGTGAATGCTG

256

[33]

15

plpB

Amino acid transport

plpB-F

plpB-R

TTTGGTGGTGCGTATGTCTTCT

AGTCACTTTAGATTGTGCGTAG

531

[18]

16

pmHAS

Capsule biosynthesis

pmHAS-F

pmHAS-R

TCAATGTTTGCGATAGTCCGTTAG

TGGCGAATGATCGGTGATAGA

430

[18]

17

psl

Outer membrane biosynthesis and integrity

psl-F

psl-R

TCTGGATCCATGAAAAAACTAACTAAAGTA

AAGGATCCTTAGTATGCTAACACAGGACGACG

400

[33]

18

ptfA

Adherence and colonization

ptfA-F

ptfA-R

TGTGGAATTCAGCATTTTAGTGTGTC

TCATGAATTCTTATGCGCAAAATCCT GCTGG

500

[18, 33]

19

sodA

Detoxification of radicals

sodA-F

soda-R

TACCAGAATTAGGCTACGC

GAAACGGGTTGCTGCCGCT

263

[33]

20

sodC

Detoxification of radicals

sodC-F

sodC-R

AGTTAGTAGCGGGGTTGGCA

TGGTGCTGGGTGATCATCATG

237

[33]

21

tadD

Adherence and colonization

tadD-F

tadD-R

TCTACCCATTCTCAGCAAGGC

ATCATTTCGGGCATTCACC

418

[18]

22

tbpA

Iron acquisition

tbpA-F

tbpA-R

TGCGACAACGGAAATTTCCTC

GGACAGTGCATATAACTTGTTTACTA

808

[33]

23

tonB

Energy transport for iron acquisition

tonB-F

tonB-R

CGACGGTGAAACCTGAGCCA

CCGAGCGATAAGCATTGACT

261

[18]

24

toxA

Exotoxin

toxA-F

toxA-R

CTTAGATGAGCGACAAGGTT

GGAATGCCACACCTCTATA

864

[33]

25

plpE

Highly immunogenic outer membrane lipoprotein

plpE-F

plpE-R

CCATGGGCATGAAACAAATCGTTTTAAA

CTCGAGTTGTGCTTGGTGACTTTTTTC

1010

[27]