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Table 2 Assembled bacterial contigs description and top BLAST hits

From: Illumina MiSeq 16S amplicon sequence analysis of bovine respiratory disease associated bacteria in lung and mediastinal lymph node tissue

Contig number Top 10 BLAST hits Query cover Percentage identity
1 (2647 bp) 1.Sneathia amnii strain SN35, complete genome CP011280.1 99% 92%
2. Streptobacillus moniliformis DSM 12112, complete genome CP001779.1 96% 90%
3. Streptobacillus moniliformis strain DSM 12112 23S ribosomal RNA gene, complete sequence NR_076688.1 96% 90%
4. Sebaldella termitidis strain ATCC 33386 23S ribosomal RNA gene, complete sequence NR_076681.1 96% 89%
5. Sebaldella termitidis ATCC 33386, complete genome CP001739.1 96% 89%
6. Leptotrichia buccalis strain C-1013-b 23S ribosomal RNA gene, complete sequence NR_076664.1 96% 88%
7. Leptotrichia buccalis DSM 1135, complete genome CP001685.1 96% 88%
8. Leptotrichia sp. oral taxon 212 strain W10393, complete genome CP012410.1 96% 87%
9. Fusobacterium hwasookii ChDC F206, complete genome CP013336.1 96% 83%
10. Propionigenium maris 23S rRNA gene, strain DSM 9537 T AJ307979.1 93% 83%
2 (1376 bp) 1. Sneathia amnii strain SN35, complete genome CP011280.1 99% 93%
2. Uncultured bacterium clone T21VE9_4 16S ribosomal RNA gene, partial sequence KR514404.1 67% 100%
3. Uncultured bacterium clone T21UE13_2 16S ribosomal RNA gene, partial sequence KR514401.1 67% 100%
4. Uncultured bacterium clone T21VE9_24 16S ribosomal RNA gene, partial sequence KR514494.1 67% 99%
5. Uncultured bacterium clone T21VE9_36 16S ribosomal RNA gene, partial sequence KR514405.1 67% 99%
6. Uncultured bacterium clone T21UE13_23 16S ribosomal RNA gene, partial sequence KR514403.1 67% 99%
7. Uncultured bacterium clone T21UE13_12 16S ribosomal RNA gene, partial sequence KR514402.1 67% 99%
8. Uncultured bacterium clone H94 16S ribosomal RNA gene, partial sequence KC894542.1 69% 99%
9. Uncultured bacterium clone H35 16S ribosomal RNA gene, partial sequence KC894531.1 69% 99%
10. Uncultured bacterium clone T21UE060212_22 16S ribosomal RNA gene, partial sequence KR514400.1 67% 99%
3 (744 bp) 1. Histophilus somni strain 2336 23S ribosomal RNA gene, complete sequence NR_103965.1 100% 99%
2. Histophilus somni strain 129P 23S ribosomal RNA gene, complete sequence NR_076444.1 100% 99%
3. Haemophilus somnus 2336, complete genome CP000947.1 100% 99%
4. Haemophilus somnus 129PT, complete genome CP000436.1 100% 99%
5. Pasteurella multocida subsp. multocida OH4807, complete genome CP004391.1 100% 94%
6. Pasteurella multocida subsp. multocida str. HN06, complete genome CP003313.1 100% 94%
7. Pasteurella multocida subsp. multocida PMTB2.1, complete genome CP007205.1 100% 94%
8. Pasteurella multocida subsp. multocida strain Pm70 23S ribosomal RNA gene, complete sequence NR_103956.1 100% 94%
9. Pasteurella multocida subsp. multocida str. Pm70, complete genome AE004439.1 100% 94%
10. Pasteurella multocida strain Pm-3, complete genome CP014618.1 100% 94%
  1. Database = Non redundant (nr) Nucleotide collection (nt).
  2. Program = BLASTN 2.3.0+ [45, 46]