Table 4 Gene expressed in D1 and D2 or co-expressed (i.e. found expressed in both samples) as percentage of the total number of transcripts and following the categorization
From: RNA-Sequencing for profiling goat milk transcriptome in colostrum and mature milk
| Â | Without annotations | With RefSeq annotations | ||||
|---|---|---|---|---|---|---|
Category | D1 | D2 | Co-expressed | D1 | D2 | Co-expressed |
FPKM value > =0.1 | 31,040 (95%) | 31,136 (95%) | 29,392 | 16,646 (60%) | 16,200 (58%) | 15,242 |
FPKM value > =1 | 17,188 (52%) | 17,751 (54%) | 15,768 | 11,327 (41%) | 10,634 (38%) | 10,203 |
FPKM value > =5 | 8,800 (27%) | 8,472 (26%) | 7,801 | 6,028 (22%) | 4,983 (18%) | 4,826 |
FPKM value > =15 | 4,465 (14%) | 3,876 (12%) | 3,643 | 3,017 (11%) | 2,153 (8%) | 2,095 |
Highly expressed genes (> = 500 FPKM) | 798 (3%) | 644 (2%) | 594 | 164 (0.06%) | 104 (0.03%) | 103 |
Medium expressed genes (> = 10 FPKM to 500 FPKM) | 7,733 (24%) | 7,771 (24%) | 6,856 | 3,782 (14%) | 2,888 (11%) | 2,750 |
Lowly expressed genes (<10FPKM) | 24,453 (74%) | 24,512 (75%) | 23,663 | 23,460 (86%) | 24,414 (89%) | 23,383 |