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Table 1 Intra- and inter-assay variability of the real-time PCR

From: Application of a new real-time polymerase chain reaction assay for surveillance studies of lymphocystis disease virus in farmed gilthead seabream

 

Intra-assay variationa

Inter-assay variationb

Copies/reaction

Cycle threshold (Ct)c

CV (%)

Cycle threshold (Ct)c

CV (%)

1 x 105

19.92 ± 0.16

0.78

18.92 ± 0.54

2.83

1 x 104

23.34 ± 0.17

0.73

22.27 ± 0.60

2.69

1 x 103

26.87 ± 0.18

0.66

26.14 ± 0.46

1.75

1 x 102

30.22 ± 0.27

0.89

29.49 ± 0.71

2.39

1.6 x 101

32.15 ± 0.47

1.45

32.22 ± 0.87

2.72

4 x 100

34.15 ± 0.80

2.34

33.37 ± 0.89

2.68

2 x 100

35.23 ± 0.99

2.80

34.09 ± 1.14

3.35

Overall CVc (%)

 

1.38 ± 0.87

 

2.63 ± 0.48

  1. a Intra-assay variation was determined on four replicates of recombinant plasmid dilutions analysed in the same PCR run
  2. b Inter-assay variation was calculated on values obtained in four separate PCR runs
  3. c Mean ± standard deviation (SD)
  4. CV coefficient of variation