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Table 7 Overview of the number of variable nucleotide and putative aminoacids positions in the alignment of 16S rDNA, ITS and the ten housekeeping genes of P. salmonis included

From: Phenotypic and genetic characterization of Piscirickettsia salmonis from Chilean and Canadian salmonids

Gene

N

No. Nucleotides

Variable positions

%

No. Amino acids

Variable positions

%

16S

18

1433

14

1,0

-

-

-

ITS

18

765

34

4,4

-

-

-

dnaK

18

1684

66

3,9

560

3

0,5

groEL

18

1454

73

5,0

484

10

2,1

tbpB

18

1879

95

5,1

626

26

4,2

mltB

18

843

20

2,4

280

5

1,8

ospA

18

364

14

3,8

121

3

2,5

radA

18

906

37

4,1

301

5

1,7

airA

18

407

21

5,2

135

6

4,4

bax

18

612

18

2,9

203

9

4,4

tnpA

18

356

20

5,6

118

5

4,2

elfP

18

473

26

5,5

157

0

0,0

MLST

216

11176

438

4,1

2985

7,2

2,6

  1. Symbols: N: number of P. salmonis sequences