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Table 2 Primers used for PCR analysis in the present study

From: Phenotypic and genetic characterization of Piscirickettsia salmonis from Chilean and Canadian salmonids

Target gene

Primer

Direction

Sequence (5´–3´)

Reference

16 s rDNA

Eug B27F

Fwd

AGAGTTTGATCMTGGCTCAG

[25]

 

Eug A1518R

Rev

AAGGAGGTGATCCANCCRCA

[25]

ITS

SRS-ITS/F

Fwd

GTACACACCGCCCGTCACAC

Present study

 

SRS-ITS/R

Rev

CCTCACGGTACTAGTTCACTATCGG

Present study

dnaK

SRS-dnaK/F2

Fwd

CCGTGTCGTGTGGCGCTAAAA

Present study

 

SRS-dnaK/R2

Rev

TTGAGATTGAGCCTGCTCCGC

Present study

 

SRS-dnaK3/F1

Fwd

CCGCGTGTGATTGAGAGTGC

Present study

 

SRS-dnaK3/R1

Rev

CGTCATCACCCCACCCATGG

Present study

groEL

SRS-groEL/F1

Fwd

CTTCGGTACCGGTTCCCGTC

Present study

 

SRS-groEL/R1

Rev

TCTTGCAGTTTCTCGCGGTCG

Present study

 

SRS-groEL/F2

Fwd

GTGAAGCTCTGGCAACACTCGTC

Present study

 

SRS-groEL/R2

Rev

AGGAAGCTCTGCAACCATCGC

Present study

tbpB

SRS-tbpB/F1

Fwd

AACTGGGCAGGCGTCACTGTT

Present study

 

SRS-tbpB/R1

Rev

CGGCGCGTCTCTAATGTTCG

Present study

 

SRS-tbpB2/F2

Fwd

CCAAGCTGGATCACCGCCAT

Present study

 

SRS-tbpB2/R2

Rev

AAAGATAGGCCCAGCCACGC

Present study

mltB

SRS-mltB/F

Fwd

ACCACTCACGCGGCATCTAA

Present study

 

SRS-mltB/R

Rev

ACTCAAATCATACACCGCCATTGCA

Present study

ospA

SRS-ospA/F

Fwd

AGCCGTCAAGAAGTCGGAGCT

Present study

 

SRS-ospA/R

Rev

TGCCAACGACCATCCGCTTG

Present study

radA

SRS-radA/F1

Fwd

ATCAGTCGCCAGCCTGTTGG

Present study

 

SRS-radA/FR1

Rev

GTCCTCGTTGCACTGGACGA

Present study

airA

SRS-air/F1

Fwd

GGGTGCGTCCGGGGATTATG

Present study

 

SRS-rairA/R1

Rev

TAAGGTGCACGCAGTGGCAT

Present study

bax

SRS-bax/F1

Fwd

TCAAGGGATCTGGGAAGTGCT

Present study

 

SRS-bax/R1

Rev

ACCACTGCCTATCTTGCTCAACA

Present study

tnpA

SRS-tnpA/F1

Fwd

ACCTGTTAAGTTCTCGGCCATT

Present study

 

SRS-tnpA/R1

Rev

AGCCTTCACAAATGTCAACAAGTGA

Present study

elfP

SRS-elfP/F

Fwd

GCCACKGCTAATTCAGCAA

Present study

 

SRS-elfP/R

Rev

STGGAATGGTCAGCCACYT

Present study