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Table 1 Oligonucleotide primers used for detection of A. phagocutophilum

From: Evaluation of different nested PCRs for detection of Anaplasma phagocytophilum in ruminants and ticks

Target gene

Primer name

Primer Sequence (5’-3’)

Annealing temp (°C)

Amplicon size (bp)

Reference

16S rRNA

ge3a

CACATGCAAGTCGAACGGATTATTC

55

932

[25]

 

ge10r

TTCCGTTAAGAAGGATCTAATCTCC

  
 

ge9f

AACGGATTATTCTTTATAGCTTGCT

55

546

 

ge2

GGCAGTATTAAAAGCAGCTCCAGG

  

Msp4

MAP4AP5

ATGAATTACAGAGAATTGCTTGTAGG

54

849

[24, 27]

 

MSP4AP3

TTAATTGAAAGCAAATCTTGCTCCTATG

  
 

msp4f

CTATTGGYGGNGCYAGAGT

55

381

 

msp4r

GTTCATCGAAAATTCCGTGGTA

  

16S rRNA

EE-1

TCCTGGCTCAGAACGAACGCTGGCGGC

50

1433

[23]

 

EE-2

AGTCACTGACCCAACCTTAAATGGCTG

  
 

EE-3

GTCGAACGGATTATTCTTTATAGCTTGC

50

926

 

EE-4

CCCTTCCGTTAAGAAGGATCTAATCTCC

  

groEL

EL(569)F

ATGGTATGCAGTTTGATCGC

62

624

[26, 34]

 

EL(1193)R

TCTACTCTGTCTTTGCGTTC

  
 

EL(569)F

ATGGTATGCAGTTTGATCGC

56

573

 

EL(1142)R

TTGAGTACAGCAACACCACCGGAA

  

16S rRNA

EC9

TACCTTGTTACGACTT

55

1462

[35]

 

EC12a

TGATCCTGGCTCAGAACGAACG

  
 

SSAP2f

GCTGAATGTGGGGATAATTTAT

55

641

 

SSAP2r

ATGGCTGCTTCCTTTCGGTTA

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