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Table 1 Statistics for two lead single nucleotide polymorphisms (SNPs) associated with nasal carriage of Staphylococcus aureus in Danish crossbred pigs (56 persistent carriers and 65 non-carriers)

From: Genome-wide association study reveals a locus for nasal carriage of Staphylococcus aureus in Danish crossbred pigs

SNP ID

Chromosome

Position (bp)

A1/A2

MAF (persistent carriers)

MAF (non-carriers)

P a

P b

MARC0099960

12

43,145,785

G/A

0.63

0.32

6.37×10−6

0.0497

ALGA0104951

12

43,380,247

G/T

0.61

0.33

1.38×10−5

0.1135

  1. MAF minor allele frequency; A1 minor allele; A2 major allele
  2. aAllelic association statistic adjusted for genomic control (Pc1df)
  3. bPermutation test statistic after 10,000 permutations adjusted for genomic control
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BMC Veterinary Research

ISSN: 1746-6148

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