Table 1 SNPs identified in the new B. microti isolate
From: First isolation and characterization of Brucella microti from wild boar
Chromosome | Reference sequence ID | Position in reference sequence | Reference base | Base in the studied B. microti strain (HUN-Bmi-01) | Location of mutation | Impact of mutation | SNP % | P not reference value | Phred score | Coverage depth |
|---|---|---|---|---|---|---|---|---|---|---|
I | NC_013119 | 63814 | A | G | BMI_I59 | synonymous | 99.1 % | 100.0 % | 60.000 | 119 |
I | NC_013119 | 115266 | C | A | cysA | non-synonymous | 96.4 % | 100.0 % | 60.000 | 84 |
I | NC_013119 | 220835 | G | T | BMI_I210 | non-synonymous | 100.0 % | 100.0 % | 60.000 | 140 |
I | NC_013119 | 300834 | G | A | fadD | synonymous | 99.3 % | 100.0 % | 60.000 | 160 |
I | NC_013119 | 362076 | T | C | xdhB | synonymous | 99.2 % | 100.0 % | 60.000 | 126 |
I | NC_013119 | 530242 | N | A | BMI_I534 | synonymous | 86.1 % | 100.0 % | 60.000 | 94 |
I | NC_013119 | 530273 | N | A | BMI_I534 | non-synonymous | 75.4 % | 100.0 % | 39.876 | 106 |
I | NC_013119 | 549069 | G | A | intergenic region | 100.0 % | 100.0 % | 60.000 | 109 | |
I | NC_013119 | 643213 | T | C | intergenic region | 99.2 % | 100.0 % | 60.000 | 134 | |
I | NC_013119 | 806268 | A | G | intergenic region | 98.0 % | 100.0 % | 60.000 | 153 | |
I | NC_013119 | 1078051 | T | C | gyrA | non-synonymous | 100.0 % | 100.0 % | 60.000 | 146 |
I | NC_013119 | 1141643 | C | T | BMI_I1167 | synonymous | 100.0 % | 100.0 % | 60.000 | 123 |
I | NC_013119 | 1145284 | C | T | pyrH | non-synonymous | 82.1 % | 100.0 % | 60.000 | 95 |
I | NC_013119 | 1251949 | G | T | BMI_I1296 | synonymous | 100.0 % | 100.0 % | 60.000 | 23 |
I | NC_013119 | 1252016 | A | T | BMI_I1296 | non-synonymous | 100.0 % | 100.0 % | 60.000 | 13 |
I | NC_013119 | 1778954 | G | A | BMI_I1855 | synonymous | 95.2 % | 100.0 % | 60.000 | 146 |
I | NC_013119 | 1790391 | T | G | BMI_I1868 | synonymous | 93.1 % | 100.0 % | 60.000 | 132 |
I | NC_013119 | 1790394 | C | A | BMI_I1868 | synonymous | 94.0 % | 100.0 % | 60.000 | 152 |
I | NC_013119 | 1853511 | C | T | BMI_I1931 | non-synonymous | 98.8 % | 100.0 % | 60.000 | 171 |
II | NC_013118 | 109915 | A | G | BMI_II112 | synonymous | 99.4 % | 100.0 % | 60.000 | 178 |
II | NC_013118 | 483021 | G | A | BMI_II495 | synonymous | 100.0 % | 100.0 % | 60.000 | 174 |
II | NC_013118 | 689243 | A | G | intergenic region | 100.0 % | 100.0 % | 60.000 | 11 | |
II | NC_013118 | 739665 | C | A | intergenic region | 100.0 % | 100.0 % | 60.000 | 148 | |
II | NC_013118 | 816002 | C | T | BMI_II819 | synonymous | 92.2 % | 100.0 % | 60.000 | 90 |
II | NC_013118 | 834372 | T | C | BMI_II841 | synonymous | 97.8 % | 100.0 % | 60.000 | 232 |
II | NC_013118 | 834392 | N | G | BMI_II841 | synonymous | 98.0 % | 100.0 % | 60.000 | 204 |
II | NC_013118 | 951779 | G | C | intergenic region | 80.1 % | 100.0 % | 60.000 | 563 | |
II | NC_013118 | 978988 | C | A | BMI_II983 | synonymous | 98.3 % | 100.0 % | 60.000 | 124 |
II | NC_013118 | 1186061 | C | T | BMI_II1178 | non-synonymous | 100.0 % | 100.0 % | 60.000 | 138 |
II | NC_013118 | 1186062 | C | T | BMI_II1178 | non-synonymous | 100.0 % | 100.0 % | 60.000 | 138 |