Table 2 Epidemiological data of 99 S. enterica ssp. enterica strains used in study
From: PCR melting profile as a tool for outbreak studies of Salmonella enterica in chickens
Serovar | MP Cluster | Strain | Source: farm/isolation date | Epidemiological links | |||
|---|---|---|---|---|---|---|---|
Farmer | Hatchery | Kind of poultry/Sample | Coexistence | ||||
Enteritidis | 838/S/09 B | Konin/16.06.2009 | F1 | H1 | (CL) | E | |
1445/S/09 K46 | Poddębice/25.08.2009 | F1 | H1 | (CL) | L | ||
MP-E1 | 1067/S/09 K2 | Brodnica/13.07.2009 | F5 | H4 | (CL) | K | |
1067/S/09 K3 | Brodnica/13.07.2009 | F5 | H4 | (CL) | K | ||
1014/S/09 K1 | Brodnica/07.07.2009 | F5 | H4 | (CL) | H | ||
MP-E2 | 1013/S/09 K4 | Brodnica/07.07.2009 | F5 | H1 | (CL) | H | |
1048/S/09 K8 | Konin/10.07.2009 | F1 | H1 | (CL) | J | ||
1047/S/09 K1 | Konin/10.07.2009 | F1 | H1 | (CL) | J | ||
MP-E3 | KK10 | Konin/20.02.2009 | F1 | H1 | (CL) | A | |
848/S/09 | Słupca/16.06.2009 | F7 | No data | (CB) | F | ||
865/S/09 | Mińsk Mazowieck/18.06.2009 | F8 | H5 | (BB) | G | ||
249 | Control (PIWet Puławy) | (S) | |||||
571/S/09 | Brodnica/06.05.2009 | F5 | H4 | (CL) | |||
KK6 | Konin/20.02.2009 | F1 | H1 | (CL) | A | ||
866/S/09 | Mińsk Mazowieck/18.06.2009 | F8 | H5 | (BB) | G | ||
MP-E4 | KK11 | Konin/20.02.2009 | F1 | H1 | (CL) | A | |
KK12 | Konin/20.02.2009 | F1 | H1 | (CL) | A | ||
WK-9 | Poddębice/28.03.2009 | F1 | H1 | (CL) | C | ||
MP-E5 | 1044/S/09 K2 | Konin/10.07.2009 | F1 | H1 | (CL) | J | |
1192/S/09 K8 | Poznań/25.07.2009 | F13 | No data | (CB) | |||
MP-E6 | 945/S/09 | Żyrardów/26.06.2009 | F9 | H6 | (CB) | ||
975/S/09 | Łomża/30.06.2009 | F10 | No data | (CB) | |||
1022/S/09 K9 | Turek/08.07.2009 | F6 | H7 | (CB) | I | ||
1143/S/09 | Konin/21.07.2009 | F1 | H1 | (CL) | |||
1206/S/09 MEK | Konin/29.07.2009 | F1 | H1 | (CL) | |||
1231/S/09 | No data | No data | No data | ||||
MP-E7 | 1714/09 | Konin/24.09.2009 | F16 | No data | (CB) | ||
2149/09 | Siedlce/13.11.2009 | F18 | No data | (CB) | |||
MP-E8 | 517/S/09 | Piotrków Trybunalski/27.04.2009 | F4 | No data | (CB) | ||
838/S/09 | Konin/16.06.2009 | F1 | H1 | (CL) | E | ||
847/S/09 | Słupca/16.06.2009 | F7 | No data | (CB) | F | ||
1085/S/09 MEK | Słupca/14.07.2009 | F7 | H2 | (CB) | |||
MP-E9 | KK9 | Konin/20.02.2009 | F1 | H1 | (CL) | A | |
WK-6 | Poddębice/28.03.2009 | F1 | H1 | (CL) | C | ||
WK-7 | Poddębice/28.03.2009 | F1 | H1 | (CL) | C | ||
MP-E10 | KK3 | Konin/20.02.2009 | F1 | H1 | (CL) | A | |
1021/S/09 | Turek/08.07.2009 | F6 | H7 | (CB) | I | ||
2619/S/10 | Słupca/17.07.2010 | F7 | H7 | (CB) | |||
KK14 | Konin/20.02.2009 | F1 | H1 | (CL) | A | ||
MP-E11 | PK1 | Krotoszyn/10.07.2009 | F2 | H2 | (CB) | B | |
1257/S/09 K7 | Słupca/03.08.2009 | F7 | H2 | (CB) | |||
1422/S/09 MEK | Zduńska Wola/21.08.2009 | F15 | H2 | (CB) | |||
1061/S/09 K5 | Słupca/12.07.2009 | F7 | No data | (CB) | |||
1545/S/09 MEK | Słupca/08.09.2009 | F7 | H2 | (CB) | M | ||
MP-E12 | 64/S/10 | Siedlce/12.01.2010 | F3 | No data | (CB) | D | |
65/S/10 | Siedlce/12.01.2010 | F3 | No data | (CB) | D | ||
1535/S/09 | Poznań/05.09.2009 | F13 | No data | (CB) | |||
1573/S/09 NWJ | Słupca/11.09.2009 | F7 | H2 | (CB) | N | ||
1748 | Control (Sanepid) | (S) | |||||
D ATCC 13076 | Control (Sanepid) | (S) | |||||
MP-E13 | 1446/S/09 K31 | Poddębice/25.08.2009 | F1 | H1 | (CL) | L | |
1515/S/09 | Mińsk Mazowiecki/03.09.2009 | F8 | H5 | (BB) | |||
1542/S/09 NWJ | Słupca/08.09.2009 | F7 | H2 | (CB) | M | ||
1572/S/09 NWJ | Słupca/11.09.2009 | F7 | H2 | (CB) | N | ||
2050/S/09 K4 | Kalisz/30.10.2009 | F17 | No data | (CB) | |||
MP-E14 | 833/S/09 | Turek/15.06.2009 | F6 | H7 | (CB) | ||
1465/S/09 MEK | No data | No data | No data | ||||
1171/S/09 | Łosice/22.07.2009 | F12 | No data | (BB) | |||
1250/S/09 | Ostrów Wlkp./03.08.2009 | F14 | No data | (CB) | |||
Moscow | 289 | Control (PIWet Puławy) | (S) | ||||
Virchow | MP-V | GAP K2 | Brodnica/03.11.2009 | F5 | H4 | (CL) | O |
GAP K3 | Brodnica/03.11.2009 | F5 | H4 | (CL) | O | ||
GAP K4 | Brodnica/03.11.2009 | F5 | H4 | (CL) | O | ||
394 | Control (PIWet Puławy)/2009 | (S) | |||||
1188/S/09 K10 | Konin/24.07.2009 | F19 | No data | (CB) | |||
1175/S/09 | Żuromin/23.07.2009 | F23 | No data | (CL) | |||
PK0 | Krotoszyn/10.07.2009 | F2 | H2 | (CB) | B | ||
Colindale | 180 | Control (PIWet Puławy) | (S) | ||||
Berta | 324 | Control (PIWet Puławy) | (S) | ||||
Heidelberg | 321 | Control (PIWet Puławy) | (S) | ||||
Hadar | 1159/S/09 K2 | Łomża/22.07.2009 | F10 | No data | (CB) | ||
Brandenburg | 584 | Control (Sanepid) | (S) | ||||
Derby | 1282/09 | Control (PIWet Puławy) | (S) | ||||
Senftenberg | F23/S/09 | Żuromin/19.06.2009 | No data | (CL) | |||
Typhimurium | 1785/S/09 | Radziejów/01.10.2009 | F29 | No data | (CB) | ||
ATCC 13311 | Control (Sanepid) | (S) | |||||
MP-T1 | 1578/S/09 | Kalisz/11.09.2009 | F17 | No data | (CB) | ||
1751 | Control (Sanepid) | (S) | |||||
2205/09 | Węgrów/9.11.2009 | F30 | No data | (ES) | |||
MP-T2 | 531 | Nowy Tomyśl/29.04.2009 | F24 | No data | (CB) | ||
1563/S/09 | Żyrardów/10.09.2009 | F27 | No data | (CB) | |||
1081/S/09 K1 | Żuromin/14.07.2009 | F23 | No data | (CL) | |||
MP-T3 | 944/S/09 | Poddębice/26.06.2009 | F25 | H3 | (G) | ||
960/S/09 | Konin/29.06.2009 | F26 | H3 | (G) | |||
1235/S/09 | Poddębice/30.07.2009 | F25 | H3 | (G) | |||
1567/S/09 | Kalisz/10.09.2009 | F28 | No data | (G) | |||
Infantis | MP-I1 | 1021/S/09 | Turek/08.07.2009 | F6 | H7 | (CB) | |
1593/09 | Koło/14.09.2009 | F21 | H7 | (CB) | |||
MP-I2 | ZK4 | Konin/01.04.2009 | F19 | H7 | (CB) | Q | |
ZK5 | Konin/01.04.2009 | F19 | H7 | (CB) | Q | ||
144/S/09 | Września/10.02.2009 | F20 | No data | (CB) | |||
Hadar | MP-H | 419/S/09 | Konin/06.04.2009 | F16 | H8 | (ES) | |
817 | Control (Sanepid) | (S) | |||||
Mbandaka | 913/S/09 | Ostrów Wlkp./23.06.2009 | F22 | H4 | (CB) | ||
MP-M | KK1 | Mława/11.03.2009 | F31 | H4 | (CB) | P | |
KK2 | Mława/11.03.2009 | F31 | H4 | (CB) | P | ||
KK3 | Mława/11.03.2009 | F31 | H4 | (CB) | P | ||
ZK1 | Konin/01.04.2009 | F19 | No data | (CB) | Q | ||
Paratyphi | A ATCC 19150 | Control (Sanepid) | (S) | ||||