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Table 4 Nucleotide and amino acid sequence identities (%) of various transmissible gastroenteritis virus (TGEV) strains

From: Molecular characterization and phylogenetic analysis of transmissible gastroenteritis virus HX strain isolated from China

  SC-Y WH-1 Purdue Purdue 115 H16 H165 M6 M60 TS
ORF1A 99.4/99.1 99.9/99.9 99.8/99.6 99.8/99.8 98.9/98.8 98.9/98.8 99.0/99.0 98.9/98.9 98.8/98.6
ORF1B 99.8/99.8 100.0/100.0 99.9/100.0 99.9/100.0 99.0/99.6 99.0/99.6 99.0/99.6 99.0/99.6 98.9/99.6
S 99.7/99.4 100.0/99.9 99.5/99.0 99.9/99.8 98.1/97.7 98.0/97.6 98.3/98.0 98.2/97.8 98.3/98.0
ORF3A 100.0/100.0 100.0/100.0 99.5/98.6 100.0/100.0 93.1/88.9 92.6/87.5 93.1/88.9 92.6/87.5 92.1/86.1
ORF3B 99.9/99.6 99.9/99.6 99.7/99.2 99.9/99.6 98.9/97.6 98.8/97.1 98.9/97.6 57.4/44.1 98.5/96.3
E 100.0/100.0 100.0/100.0 99.6/98.8 100.0/100.0 98.0/95.2 97.2/92.8 98.4/95.2 98.4/95.2 98.8/96.4
M 99.7/99.2 99.9/99.6 99.7/99.2 99.9/99.6 98.1/97.3 98.1/97.3 98.2/97.7 98.2/97.7 98.0/97.0
N 99.9/99.7 100.0/100.0 99.7/99.7 99.9/99.7 98.2/98.4 98.1/98.4 98.2/98.4 98.0/98.2 98.1/98.2
ORF7 100.0/100.0 100.0/100.0 100.0/100.0 100.0/100.0 96.2/93.7 96.2/93.7 95.8/93.7 95.8/92.4 96.2/93.7