Table 2 Genogroup and percent nucleotide identity of reference porcine epidemic diarrhea viruses to NPL PEDV 2013 P10.1
Virus (accession number) | Genogroup | ORF 1ab | S | ORF3 | E | M | NP |
|---|---|---|---|---|---|---|---|
CHS (JN47228) | G1 | 98.0 | 93.8 | 98.2 | 96.5 | 98.1 | 96.8 |
CO13 (KF272920) | G2 | 100.0 | 99.9 | 99.9 | 100.0 | 100.0 | 100.0 |
CV777 (AF353511) | G1 | 97.3 | 94.0 | 96.9 | 97.0 | 98.2 | 96.0 |
DR13 Attenuated (DQ462404) | G1 | 97.8 | 93.6 | 93.1 | 96.7 | 97.9 | 96.8 |
DR13 Virulent (JQ023161) | G2 | 98.2 | 95.0 | 98.5 | 98.3 | 98.4 | 97.4 |
JS2008 (KC109141) | G1 | 98.0 | 94.2 | 93.1 | 96.1 | 97.8 | 96.8 |
LZC (EF185992) | G1 | 97.2 | 93.5 | 95.6 | 96.1 | 97.2 | 95.8 |
MN (KJ468752) | G2 | 99.8 | 99.7 | 100.0 | 100.0 | 100.0 | 100.0 |
OH851 (KJ399978) | G2 | 99.5 | 96.9 | 100.0 | 100.0 | 99.9 | 99.8 |
SM98 (GU937797) | G1 | 97.2 | 93.7 | 96.8 | 96.1 | 98.1 | 95.9 |
NPL PEDV2013 p0 (KJ778615) | G2 | 100.0 | 99.8 | 100.0 | 100.0 | 100.0 | 100.0 |