Table 1 Diagnostic sensitivity and specificity of the CaPV LAMP assay as tested against representative strains of CaPV
From: Detection of capripoxvirus DNA using a novel loop-mediated isothermal amplification assay
Virus | Isolate name | LAMP result (Tp)a | PCR result (Ct)b |
|---|---|---|---|
GTPV | Yemen | 31.89 | 20.98 |
GTPV | Turkey | 23.89 | 20.77 |
GTPV | Saudi Arabia | 33.62 | 17.67 |
GTPV | Oman | 27.17 | 22.96 |
GTPV | Mongolia | 22.25 | 20.27 |
GTPV | India | 22.65 | 19.44 |
GTPV | Held | 29.81 | 24.01 |
GTPV | Gorgan (Iran) | 34.34 | 21.97 |
GTPV | Ghana | 38.10 | 26.05 |
GTPV | China | 44.54 | 36.42 |
GTPV | Bangladesh | 32.27 | 21.74 |
GTPV | Abu Ghraib (Iraq) | 27.27 | 17.29 |
GTPV | Kano (Nigeria) | 23.57 | 21.47 |
GTPV | Morocco | 33.59 | 21.35 |
GTPV | Pakistan | 44.96 | 40.28 |
GTPV | Vietnam | 28.96 | 22.95 |
SP/GTPV | Kenya | 29.62 | 18.22 |
SP/GTPV | Saudi Arabia | 37.84 | 21.39 |
SP/GTPV | Nigeria | 42.30 | 27.98 |
SP/GTPV | Yemen | 29.56 | 22.75 |
SP/GTPV | KS-1 | 36.77 | 22.60 |
SPPV | Romania | 37.14 | 24.78 |
SPPV | Abu Ghraib (Iraq) | 34.91 | 21.84 |
SPPV | Isiolo (Kenya) | 27.66 | 23.84 |
SPPV | Kedong (China) | 24.83 | 21.75 |
SPPV | Mongolia | 29.54 | 17.65 |
SPPV | Nigeria | 36.19 | 29.03 |
SPPV | Oman | 26.91 | 19.63 |
SPPV | Pakistan | 38.79 | 22.60 |
SPPV | Senegal | 40.02 | 21.71 |
SPPV | Cyprus | 58.85 | 34.38 |
SPPV | India | 41.68 | 23.52 |
SPPV | Sudan | 32.35 | 21.03 |
SPPV Vaccine Strain | Saudi Arabia | 38.05 | 22.89 |
SPPV Vaccine Strain | Stavropol (Russia) | 37.61 | 20.79 |
SPPV Vaccine Strain | France | 38.33 | 21.62 |
SPPV Vaccine Strain | Pendik (Turkey) | 36.38 | 22.27 |
LSDV | Israel | 27.75 | 20.96 |
LSDV | Nigeria | 30.16 | 21.82 |
LSDV | Uganda | 23.73 | 18.69 |
LSDV | Senegal | 29.22 | 23.26 |
LSDV | Cameroon | 31.49 | 21.50 |
LSDV | Egypt 93 | 31.41 | 23.37 |
LSDV | Egypt 2006 | 32.14 | 26.09 |
LSDV | Neethling | 26.98 | 19.59 |
LSDV | Oman | 32.19 | 32.19 |
LSDV | Ghana | 28.55 | 22.63 |
n/a | Negative Cattle Blood (n = 14) | Negative (n = 14) | Negative (n = 14) |
n/a | Negative Sheep Blood (n = 8) | Negative (n = 8) | Negative (n = 8) |
n/a | Negative Cattle Skin (n = 16) | Negative (n = 16) | Negative (n = 16) |
Buffalopox virus | n/a | Negative | Not Tested |
Camelpox virus | n/a | Negative | Not Tested |
Cheetah poxvirus | n/a | Negative | Not Tested |
Cowpox virus | n/a | Negative | Not Tested |
Orf virus | n/a | Negative | Not Tested |
Swine poxvirus | n/a | Negative | Not Tested |