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Table 1 Primer sequences

From: Glucocorticoid receptor is involved in the breed-dependent transcriptional regulation of mtDNA- and nuclear-encoded mitochondria genes in the liver of newborn piglets

Primer name

Sequence

Source sequence

Tm (°C)

Used for

COX1

F: TGGTGCCTGAGCAGGAATAGTG

ENSSSCG00000018075

64

mRNA quantification

 

R: ATCATCGCCAAGTAGGGTTCCG

   

COX2

F: GCTTCCAAGACGCCACTTCAC

ENSSSCG00000018078

64

mRNA quantification

 

R: TGGGCATCCATTGTGCTAGTGT

   

COX3

F: GGCTACAGGGTTTCACGGGTTG

ENSSSCG00000018082

64

mRNA quantification

 

R: TCAGTATCAGGCTGCGGCTTCA

   

ND3

F: AGCACGCCTCCCATTCTCAAT

ENSSSCG00000018084

64

mRNA quantification

 

R: TGCTAGGCTTGCTGCTAGTAGG

   

CYTB

F: CTGAGGAGCTACGGTCATCACA

ENSSSCG00000018094

64

mRNA quantification

 

R: GCTGCGAGGGCGGTAATGAT

   

ND1

F: TCCTACTGGCCGTAGCATTCCT

ENSSSCG00000018065

64

mRNA quantification

 

R: TTGAGGATGTGGCTGGTCGTAG

   

ND2

F: ATCGGAGGGTGAGGAGGGCTAA

ENSSSCG00000018069

64

mRNA quantification

 

R: GTTGTGGTTGCTGAGCTGTGGA

   

ND4L

F: GATCGCCCTTGCAGGGTTACTT

ENSSSCG00000018086

64

mRNA quantification

 

R: CTAGTGCAGCTTCGCAGGCT

   

ND4

F: TCGCCTATTCATCAGTAAGTCA

ENSSSCG00000018087

64

mRNA quantification

 

R: GGATTATGGTTCGGCTGTGTA

   

ND5

F: CGGATGAGAAGGCGTAGGAA

ENSSSCG00000018091

64

mRNA quantification

 

R: GCGGTTGTATAGGATTGCTTGT

   

ND6

F: ACTGCTATGGCTACTGAGATGT

ENSSSCG00000018092

64

mRNA quantification

 

R: CTTCCTCTTCCTTCAACGCATA

   

ATP6

F: ACTCATTCACACCCACCACACA

ENSSSCG00000018081

64

mRNA quantification

 

R: CCTGCTGTAATGTTGGCTGTCA

   

ATP8

F: TGCCACAACTAGATACATCC

ENSSSCG00000018080

62

mRNA quantification

 

R: GCTTGCTGGGTATGAGTAG

   

IDH2

F: GGACAGTCACCCGCCACTA

ENSSSCG00000001852

62

mRNA quantification

 

R: CGTCCAGGCAAAGATGCTG

   

AK1

F: TTGGACATGCTCCGAGACGC

ENSSSCG00000005627

62

mRNA quantification

 

R: CCGATCTTCCGCTCAAACTCTT

   

ATP5H

F: CTACCTGAGAAGCCACCTGC

NM_001244684

62

mRNA quantification

 

R: GCTGCCCACCTATGACCAC

   

PPIA

F: GACTGAGTGGTTGGATGG

ENSSSCG00000016737

62

mRNA quantification

 

R: TGATCTTCTTGCTGGTCTT

   

18S

F: CCCACGGAATCGAGAAAGAG

ENSSSCG00000001502

64

DNA contamination detection

 

R: TTGACGGAAGGGCACCA

   

MT_controlregion

F: CCCTATAACGCCTTGCCAAACC

 

62

ChIP, MeDIP, mtDNA copy number

 

R: GGGTAGGTGCCTGCTTTCGTAG

   

MT_GRE_neg

F: TCGCCTATTCATCAGTAAGT

 

62

ChIP

 

R: GAGGATGTTAGTCCGTGGG

   

MT_MeDIP_neg

F: CTCAGTAGCCATAGCAGTA

 

62

MeDIP

 

R: TGGACTTGGGTTGATTGT

   

IDH2_promoter

F: GGTTCAACAAGCCTTACTCACA

 

62

ChIP, MeDIP

 

R: GGAGACAGGAGCCGCATAG

   

AK1_promoter

F: TGGGAGATGGATATGTGGGC

 

62

ChIP, MeDIP

 

R: GCATGGATTCTGGGGACTGT

   

ATP5H_promoter

F: CCAAAGGTACATGGACTGC

 

62

ChIP, MeDIP

 

R: GCATCTTGGGTGGTTTTAT

   

PPIA_GRE_neg

F: GTTCACAGGGTGGTGACTT

 

62

ChIP

 

R: CAGGACCCGTATGCTTCA

   

ACTB_MeDIP_neg

F: CTGGGCATCAGAACCTGT

 

62

MeDIP, mtDNA copy number

 

R: GAGCAATCCCCTGAAGAA

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