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Table 2 CMT-associated ESR1 SNPs in the ESS cases and controls

From: The ESR1 gene is associated with risk for canine mammary tumours

SNP NCBI SNP ID Minor allele Frequency of minor allele Major allele P Raw a P Bonf b P Perm c OR
    Cases Controls      
ESR1 INT 7-8a ss244244344 A 0.033 0.106 G 0.002 0.021 0.018 0.3
ESR1 EX 2 rs21960513 C 0.299 0.391 T 0.033 0.362 0.042 0.7
ESR1 EX 4 ss244244343 G 0.006 0.027 A 0.052 0.568 0.155 0.2
  1. (n = 165 and n = 94, respectively, after QC).
  2. aP-value from chi-square test in PLINK.
  3. b Bonferroni corrected for the number of LD blocks (11).
  4. c EMP1 value after 10,000 permutations in PLINK.
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