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Figure 2 | BMC Veterinary Research

Figure 2

From: Discovery and partial characterization of a non-LTR retrotransposon that may be associated with abdominal segment deformity disease (ASDD) in the whiteleg shrimp Penaeus (Litopenaeus) vannamei

Figure 2

Phylogenetic tree of RT sequences from non-LTR elements. This comparison of reverse transcriptase (RT) domains of non-long terminal repeat (non-LTR) elements was constructed using default parameters for the neighbor-joining method of MEGA4 software. The numbers indicate the percentages of bootstrap support from 1000 replicates. The name of each non-LTR element and clade is given to the right. The accession numbers of elements represented are as follows: doc (X17551), F (M17214), JuanA (M95171), JuanC (M91082), Idt (M28878), Idm (M14954), BGR (X60372), BgI (EF413180.2), LOA (X60177), Lian (U87543), TRIM (X59239), BILBO (U73800), cgt13 (L76169), mgr583 (AF018033), Sam3 (U46668), Sam6 (Z82275), CR1 (U88211), TurtCR1 (AB005891), RT1 (M93690), RT2 (M93691), SM67625701 (CAJ00236), BDDFcow (M63452), RTE1 (AF025462), RTE2 (U58755), Dong (L08889), R4 (U29445), r2dm (X51967), R2Dsim (U13033), R2Dmerc (AF015685), cin4 (Y00086), ta11 (3047086), L1hs (U93574), L1dog (AB012223), slacs (X17078), CZAR (M62862), gIIintron (ZP_00604434), Pm82409002 (ABB73282), LSNONLTR1 (EU180975), LSNONLTR3 (EU180976), (LvEST40956221 (CK570639), LvGENAY466169 (AY466169) and LvGENAY466256 (AY466256).

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BMC Veterinary Research

ISSN: 1746-6148

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