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Table 5 Primers and ZNA probe used in the multiplex real-time PCR assay for the M gene

From: Comparison of viremia of type II porcine reproductive and respiratory syndrome virus in naturally infected pigs by zip nucleic acid probe-based real-time PCR

Primer or probe

Sequence (5′-3′)

Primer length (bp)

Amplicon length (bp)

Positiona

PRRSV-M177F

CATTCTGGCCCCTGCCCA

18

177

14698-14715

PRRSV-M177R

ACCACTCCYYGYTTDACAGCT

21

14874-14854

NA Probe

FAM-CTCGTGTTGGGTGGCAGA-ZNA4 BHQ1

18

 

14834-14851

  1. aNucleotide numbering is based on the PRRSV isolate of strain VR-2332 (accession no. DQ176021).