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Table 1 Oligonucleotide primers employed in this study

From: Differentially expressed proteins in the skin mucus of Atlantic cod (Gadus morhua) upon natural infection with Vibrio anguillarum

Gene name

 

Sequence (5’-3’)

Primer

Purpose

Acc.

   

efficiency (%)

 

number

Profilin2 (Pfn2)

F1

CCAGCCACTCAATATGTCGT

 

cloning

[GenBank:KC460541]

R2

CAAGAACCTGGGAAACACAC

 

F

ATCGCAGCACTTTATTCACC

95.18

qPCR

 

R

GCGTCCTCCTTGTAGAGGTT

Peroxiredoxin 6 (Prdx6)

F

TATCGGTGAGACAGGACCAT

 

cloning

[GenBank:KC460539]

R

TGGCGGTTTATTCTAAGTGC

 

F

GATGAGATCGACAAGGATGG

96.99

qPCR

 

R

TCTATGACCCTCAGCAGCTC

Flotillin1 (Flot1)

F

TCGCTGAAATAGGTCTCTGG

 

cloning

[GenBank:KC460542]

R

ACTCAGCCTTCTTGGTGTTG

 

F

ACCAGGACTACCTCCACTCC

91.88

qPCR

 

R

TACTGGGCAGACACCTTCTC

Calpain small subunit 1 (Capns1)

F

TTCTCTTCTCACCGCAGAAC

 

cloning

[GenBank:KC460540]

R

GACTTTTCCAGCTCCTCCTC

 

F

AACATGGCAACATGGACTTT

94.05

qPCR

 

R

TTGACATCAAGGGAGATGGT

Beta 2 Tubulin (Tubb2)

F

CAGCTACTTCGTGGAATGGA

94.47

qPCR

[GenBank:AAD56401]

R

CTGTTGCCGATGAAGGTTAC

Cold inducible RNA binding protein (Cirbp)

F

CTCTTCGGAACTCTCAACCA

 

cloning

[GenBank:KC460543]

R

AATACAGCCAGCCAAGTGAC

 

F

GTATGGAAACATCGCCAAAG

94.17

qPCR

 

R

CTCGTCGGCATTATCAAACT

Glutathione S-transferase omega1(Gsto1)

F

ATTGCGTCTTGGTCATTCAT

 

cloning

[GenBank:KC460544]

R

ACAGGCCATAGTCGTAGTCG

 

F

CTGAAACACTTCCTGGATGG

95.60

qPCR

 

R

GCGTGCATGGTTTCTTTAAC

Ubiquitin (Ubi)

F

GGCCGCAAAGATGCAGAT

96.10

qPCR

[GenBank:EX735613]

R

CTGGGCTCGACCTCAAGAGT

Acidic ribosomal protein (Arp)

F

TGATCCTCCACGACGATGAG

95.37

qPCR

[GenBank:EX741373]

R

CAGGGCCTTGGCGAAGA

Interleukin 1β (il1β)

F

GGAGAACACGGACGACCTGA

 

qPCR

[GenBank:AJ535730]

 

R

CGCACCATGTCACTGTCCTT

   
  1. 1Forward primer.
  2. 2 Reverse primer.