Primer name | Position on MAP K10 genome, acc. no AE016958 | Sequence | Target | Thermal conditions (x = No. of cycles) | Reference |
---|---|---|---|---|---|
IS900/150 C | 39946-39969 | 5´-CCGCTAATTGAGAGATGCGATTGG-3’ | IS900 | 95 °C-3 min, 45x: 95 °C-30 sec,61 °C-30 sec; 72 °C-20 sec; 72 °C-3 min | [32] |
IS900/921 | 40174-40150 | 5´-AATCAACTCCAGCAGCGCGGCCTCG-3’ | |||
MA901/373up | Not applicable | 5’-CGGATTGCTAACCACGTGGTGTGTG-3’ | IS901 | 95 °C-3 min, 45x: 95 °C-30 sec; 60 °C-30 sec; 72 °C-40 sec; 72 °C-3 min | [25] |
MA901/956do | Not applicable | 5’-GTGCTGCGAGTTGCTTGATGAG-3’ | |||
IS1311auF (M56) | 33911- 33930 | 5’-GCGTGAGKCTCTGTGGTGAA-3’ | IS1311 | 95 °C-3 min, 45x: 95 °C - 30 sec; 59 °C - 30 sec; 72 °C-40 sec; 72 °C-3 min | |
M119 | 33323-33340 | 5’-ATGACGACCGCTTGGGAG-3’ | |||
M2/F | 3253559-3253583 | 5’-CCTGCTCGACGAACACCTCAA-3’ | MIRU 2 | 95 °C-3 min, 47x: 97 °C-30 sec; 60 °C-30 sec; 72 °C-60 sec; 72 °C-3 min | This study |
M2/R | 3253860-3253834 | 5’-CGAAGATCCTGGGACTGGACGAGTTGG-3 | |||
M3/F | 4441771-4441797 | 5’-CGGATCGACATTCACCCTGTCCATTCC-3’ | MIRU 3 | 95 °C-3 min, 47x: 97 °C-30 sec; 57 °C-30 sec; 72 °C-60 sec; 72 °C-3 min | This study |
M3/R | 4442081-4442059 | 5’-CGAAGCCCTCCTTACGGAGCAGG-3’ | |||
M32/F | 115702-1125726 | 5’-CAGCGCCACAGGGTTTTTGGTGAAG-3’ | VNTR 32 | 95 °C-3 min, 47x: 97 °C-30 sec; 60 °C-30 sec; 72 °C-60 sec; 72 °C-3 min | This study |
M32/R | 1126006-1125981 | 5’-GCGGAAATCCAACAGCAAGGACGGAC-3’ | |||
SRL1F | 1793439-1793420 | 5’- GGTGTTCGGCAAAGTCGTTGTGCC-3 | SSR 1 | 95 °C-3 min, 47x: 97 °C-30 sec; 61 °C-30 sec; 72 °C-40 sec; 72 °C-3 min | This study |
SRL1R | 1792995-1793014 | 5’-GCGCGTCAGACTGTGCGGTATGG-3’ | |||
SRL2F | 2719265-2719287 | 5’-CGGCTGCACTTGCACGACTCTAGG-3’ | SSR 2 | 95 °C-3 min, 47x: 97 °C-30 sec; 64 °C-60 sec; 72 °C-40 sec; 72 °C-3 min | This study |
SRL2R | 2718879-2718902 | 5’-GCGTAGCGTTGTGGGCTTGGAGG-3’ | |||
SLR8F | 1027929-1027950 | 5’-GCGAGATGTCGACCATCCTGAC-3’ | SSR 8 | 95 °C-3 min, 47x: 97 °C-30 sec; 59 °C-30 sec; 72 °C-20 sec; 72 °C-3 min | This study |
SLR8R | 1028263-1028283 | 5’-CGCTCGACGATCAGCGTGTTG-3’ |  |  |  |