Figure 4
Phylogenetic analysis. Phylogeny reconstruction made by the Neighbor-Joining method, with a Bootstrap test of 1000 replicates, and a substitution model based on amino acid (aa) p-distance, inferred above 47 aa and including 54 taxa. In the case of herpesviruses from the ICTV, each sequence name refers to the GenBank accesion number, the virus name and to the Family or Gender it belongs to [Family Herpesviridae: Subfamilia Alphaherpesvirinae: Gender Simplexvirus (s): Human herpesvirus 1 (HHV-1), Human herpesvirus 2 (HHV-2), Cercopithecine herpesvirus 1 (CeHV-1), Cercopithecine herpesvirus 2 (CeHV-2); Gender Varicellovirus (v): Suid herpesvirus 1 (SuHV-1), Equine herpesvirus 1 (EHV-1), Cercopithecine herpesvirus 9 (CeHV-9), Gender Mardivirus (m): Meleagrid herpesvirus 1 (MeHV-1), Gallid herpesvirus 2 (GaHV-2), Gallid herpesvirus 3 (GaHV-3); Gender Iltovirus (i): Gallid herpesvirus 1 (GaHV-1), Psittacid herpesvirus 1 (PsHV-1); Subfamily Betaherpesvirinae: Gender Cytomegalovirus (c): Cercopithecine herpesvirus 8 (CeHV-8), Human herpesvirus 5 (HHV-5), Pongine herpesvirus 4 (PoHV-4), Gender Muromegalovirus (mu): Murid herpesvirus 2 (MuHV-2), unassigned Beta-HV: Tupaiid herpesvirus 1 (THV); Subfamily Gammaherpesvirinae: Gender Lymphocryptovirus (l): Human herpesvirus 4 (HHV-4), Callitrichine herpesvirus 3 (CalHV-3); Gender Rhadinovirus (rh): Saimiriine herpesvirus 2 (SaHV-2), Ateline herpesvirus 3 (AtHV-3), Bovine herpesvirus 4 (BoHV-4), Cercopithecine herpesvirus 17 (CeHV-17), Murid herpesvirus 4 (MuHV-4), Human herpesvirus 8 (HHV-8), Gender Percavirus (p): Equid herpesvirus 2 (EHV-2), Gender Macavirus (ma): Alcelaphine herpesvirus 1 (AHV-1)]; Family Alloherpesviridae (a): Ictalurid herpesvirus 1 (IcHV-1); Family Malacoherpesviridae (mal): Ostreid herpesvirus 1 (OsHV-1). In the case of the cetacean herpesviruses sequences, names are refering to the GenBank accesion number, the cetacean species [Species: Tt, Tursiops truncatus; Sc, Stenella coeruleoalba, Zc, Ziphius cavirostris; Oo, Orcinus orca; Pc, Pseudorca crassidens; Pe, Peponocephala electra; Pm, Physeter macrocephalus; Ms, Mesoplodon stejnegeri; Kg, Kogia sima; Md, Mesoplodon densirostris; Gg, Grampus griseus] and the country.