Table 2 MLVA genotyping results of C. burnetii strains isolated from domestic ruminants in Spain
From: Genotyping of Coxiella burnetiifrom domestic ruminants in northern Spain
MLVA-6 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Farm1 | Source | Origin | Year | Ct | MLVA | Ms23 | Ms24 | Ms27 | Ms28 | Ms33 | Ms34 |
Gt1 | placenta | Alava | 2010 | 8.9 | S | 1 | 11 | 2 | 3 | 2 | 3 |
Gt2 | placenta | Bizkaia | 2010 | 5.4 | AE | 4 | 9 | 3 | 3 | 3 | 4 |
Gt3 | placenta | Toledo | 2010 | 10.1 | T | 3 | 9 | 4 | 5 | 2 | 2 |
Gt4 | placenta | Zamora | 2005 | 11.2 | S | 1 | 11 | 2 | 3 | 2 | 3 |
DC1 | Vaginal swab | Girona | 2011 | 18.3 | I | 6 | 13 | 2 | 7 | 4 | 9 |
DC1 | Vaginal swab | Girona | 2011 | 25.5 | I | 6 | 13 | 2 | 7 | 4 | 9 |
DC1 | Vaginal swab | Girona | 2011 | 14.8 | I | 6 | 13 | 2 | 7 | 4 | 9 |
DC1 | Individual milk | Girona | 2011 | 23.9 | I | 6 | 13 | 2 | 7 | 4 | 9 |
DC1 | Individual milk | Girona | 2011 | 22.3 | I | 6 | 13 | 2 | 7 | 4 | 9 |
DC1 | Aerosol | Girona | 2011 | 30.4 | - | 03 | 0 | 0 | 0 | 0 | 0 |
DC2 | Individual milk | Bizkaia | 2010 | 24.2 | J | 6 | 13 | 2 | 7 | 4 | 10 |
DC2 | Individual milk | Bizkaia | 2010 | 31.7 | Mixed4 | 6 | ?5 | 2 | ? | 2 | ? |
DC2 | BTM2 | Bizkaia | 2010 | 26.9 | J | 6 | 13 | 2 | 7 | 4 | 10 |
DC3 | Individual milk | Bizkaia | 2010 | 28.0 | J | 6 | 13 | 2 | 7 | 4 | 10 |
DC3 | Individual milk | Bizkaia | 2010 | 23.4 | J | 6 | 13 | 2 | 7 | 4 | 10 |
DC4 | Vaginal swab | Bizkaia | 2011 | 34.2 | Partial | 0 | 13 | 0 | 0 | 0 | 3 |
DC5 | Individual milk | Navarra | 2011 | 27.7 | I | 6 | 13 | 2 | 7 | 4 | 9 |
DC6 | BTM | Cantabria | 2011 | 25.9 | AC | 6 | 15 | 2 | 7 | 4 | 12 |
DC7 | Individual milk | Lugo | 2011 | 31.7 | AD | 6 | 11 | 2 | 3 | 4 | 3 |
DC8 | BTM | Bizkaia | 2009 | 25.2 | S | 1 | 11 | 2 | 3 | 2 | 3 |
DC9 | BTM | Bizkaia | 2009 | 26.1 | AB | 6 | 13 | 2 | 7 | 4 | 12 |
DC10 | BTM | Bizkaia | 2010 | 23.7 | - | 0 | 0 | 0 | 0 | 0 | 0 |
DC11 | BTM | Bizkaia | 2009 | 27.3 | I | 6 | 13 | 2 | 7 | 4 | 9 |
DC12 | BTM | Bizkaia | 2009 | 28.6 | M | 6 | 13 | 2 | 7 | 4 | 11 |
Sh1 | placenta | Alava | 2004 | 6.4 | T | 3 | 9 | 4 | 5 | 2 | 2 |
Sh2 | Vaginal swab | Gipuzkoa | 2007 | 10.8 | AA | 3 | 9 | 5 | 5 | 2 | 2 |
Sh2 | Faeces | Gipuzkoa | 2007 | 16.0 | AA | 3 | 9 | 5 | 5 | 2 | 2 |
Sh2 | Faeces | Gipuzkoa | 2007 | 27.0 | AA | 3 | 9 | 5 | 5 | 2 | 2 |
Sh2 | Individual milk | Gipuzkoa | 2007 | 28.8 | AA | 3 | 9 | 5 | 5 | 2 | 2 |
Sh2 | Aerosol | Gipuzkoa | 2008 | 31.6 | Z | 1 | 11 | 2 | 3 | 2 | 2 |
Sh2 | Aerosol | Gipuzkoa | 2009 | 30.0 | Partial | 9 | 0 | 5 | 3 | 0 | 4 |
Sh3 | Vaginal swab | Gipuzkoa | 2008 | 6.3 | S | 1 | 11 | 2 | 3 | 2 | 3 |
Sh3 | Vaginal swab | Gipuzkoa | 2008 | 10.8 | S | 1 | 11 | 2 | 3 | 2 | 3 |
Sh3 | Vaginal swab | Gipuzkoa | 2009 | 27.9 | S | 1 | 11 | 2 | 3 | 2 | 3 |
Sh3 | Placenta | Gipuzkoa | 2010 | 30.0 | S | 1 | 11 | 2 | 3 | 2 | 3 |
Sh3 | Aerosol | Gipuzkoa | 2011 | 32.8 | S | 1 | 11 | 2 | 3 | 2 | 3 |
Sh4 | Vaginal swab | Gipuzkoa | 2008 | 12.6 | S | 1 | 11 | 2 | 3 | 2 | 3 |
Sh4 | Vaginal swab | Gipuzkoa | 2008 | 25.0 | Partial | 4 | 11 | 0 | 3 | 0 | 0 |
Sh4 | Aerosol | Gipuzkoa | 2008 | 28.2 | S | 1 | 11 | 2 | 3 | 2 | 3 |
Sh4 | Enviromental samples | Gipuzkoa | 2011 | 32.6 | S | 1 | 11 | 2 | 3 | 2 | 3 |
Sh4 | Enviromental samples | Gipuzkoa | 2011 | 30.9 | - | 0 | 0 | 0 | 0 | 0 | 0 |
Sh5 | Vaginal swab | Gipuzkoa | 2008 | 7.1 | - | 0 | 0 | 0 | 0 | 0 | 0 |
Sh5 | Faeces | Gipuzkoa | 2008 | 28.5 | S | 1 | 11 | 2 | 3 | 2 | 3 |
Sh5 | Aerosol | Gipuzkoa | 2010 | 32.9 | Partial | 0 | 11 | 0 | 0 | 0 | 0 |
Sh5 | Enviromental samples | Gipuzkoa | 2011 | 29.7 | Partial | 0 | 0 | 0 | 3 | 0 | 4 |