Table 2 The percentage of OTUs that were assigned to the 20 most abundant microbial genera
Bacterial genus assignment | Percent of all horses with genus present | Pooled | Control group | Laminitis group | ||
|---|---|---|---|---|---|---|
Mean | Mean | S.E. | Mean | S.E. | ||
N = 13 | N = 7 | N = 5 | ||||
Streptococcus | 100% | 21.00% | 24.10% | 9.03% | 16.03% | 8.71% |
RFP12 (O) | 100% | 19.96% | 16.79% | 5.32% | 25.02% | 4.01% |
Ruminococcaceae (F) | 100% | 8.95% | 8.30% | 1.92% | 9.99% | 1.54% |
Clostridiaceae (F) | 100% | 6.20% | 10.03%* | 0.50% | 0.07% | 1.29% |
Bacteroidales (O) | 100% | 5.41% | 3.96% | 0.64% | 7.73% | 0.67% |
Clostridium | 100% | 4.75% | 5.30% | 2.87% | 3.88% | 0.80% |
Clostridiales (O)* | 100% | 4.58% | 3.80% | 1.03% | 5.82% | 0.92% |
Lachnospiraceae (F) | 100% | 4.14% | 4.07% | 1.53% | 4.25% | 0.90% |
Treponema | 100% | 2.58% | 2.87% | 0.34% | 2.10% | 0.34% |
Clostridiales (O)* | 100% | 2.27% | 1.63% | 0.34% | 3.29% | 0.39% |
Ruminococcaceae (F) | 100% | 1.81% | 1.66% | 0.60% | 2.04% | 0.26% |
Akkermansia | 94% | 1.80% | 1.30% | 0.32% | 2.61% | 0.56% |
Oscillospira | 100% | 1.44% | 1.51% | 0.48% | 1.34% | 0.13% |
Ruminococcus | 88%% | 1.30% | 1.53% | 0.49% | 0.95% | 0.22% |
Lachnospiraceae (F) | 100% | 1.16% | 1.02% | 0.27% | 1.39% | 0.15% |
Clostridiales XIII I. sedis (F) | 100% | 0.99% | 0.50% | 0.17% | 1.78% | 0.13% |
Firmicutes (P) | 94% | 0.93% | 0.81% | 0.71% | 1.12% | 0.30% |
Lactobacillus | 88% | 0.82% | 0.88% | 0.05% | 0.72% | 0.18% |
Staphylococcus | 67% | 0.78% | 1.27% | 0.57% | 0.00% | 0.00% |
Coprococcus | 88% | 0.65% | 0.60% | 0.27% | 0.73% | 0.21% |