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Table 1 Orf virus NA1/11 and published Parapoxvirus strains used for phylogenetic analysis

From: Isolation and phylogenetic analysis of orf virus from the sheep herd outbreak in northeast China

Geninfo Identifier (gi)

Strain

Species of origin

Country of origin

Genes

Reference

No. In nMDS

294653624

JS04

Sheep

China

ORFV011,ORFV059

Liu et al. (2007)[17]

1

336169664

Gansu/2009

Sheep

China

ORFV011

Zhang et al. (unpublished)

2

269854030

Jilin

Sheep

China

ORFV011, ORFV059

Zhao et al. (2010)[5]

3

323364296

Shanxi

Goat

China

ORFV011, ORFV059

Shi (unpublished)

4

284178603

Hub/2009

Goat

China

ORFV011

Zhang et al. (2010)[12]

5

336169666

LiaoNing/10

Goat

China

ORFV011

zhang et al. (unpublished)

6

365266883

Xinjiang

Sheep

China

ORFV011

Lui et al. (unpublished)

7

365266887

Shanxi/11

Goat

China

ORFV011

Lui et al. (unpublished)

8

NA*

NA1/11

Sheep

China

ORFV011, 059, 109, 110

Present study

9

197344484

Hoping

Goat

Taiwan

ORFV011

Chan et al. (2009)[18]

10

114225403

Natou

Goat

Taiwan

ORFV011

Chan et al. (2007)[10]

11

163860191

Taiping

Goat

Taiwan

ORFV011

Chan et al. (2007)[10]

12

255040176

Korea

Goat

Korea

ORFV011

Oem et al. (2009)[19]

13

82570507

India67/04

Sheep

India

ORFV011

Hosamani et al. (2006)[11]

14

284159117

Mukteswar/09

Sheep

India

ORFV011

Veskatesan et al.(unpublished)

15

82570509

India79/04

Sheep

India

ORFV011

Hosamani et al. (2006)[11]

16

82570503

India82/04

Goat

India

ORFV011

Hosamani et al. (2006)[11]

17

82570505

India59/05

Goat

India

ORFV011

Hosamani et al. (2006)[11]

18

371925323

Assam/10

Capra

India

ORFV011

Bora et al. (unpublished)

19

357595057

Assam/09

Capra

India

ORFV011

Bora et al. (unpublished)

20

308225028

Muk/2000

Goat

India

ORFV011

Bora et al. (unpublished)

21

367462731

MT-05

Sheep

Brazil

ORFV011

Abrahao et al. (unpublished)

22

344050163

NE2

Goat

Brazil

ORFV011

Abrahao et al. (unpublished)

23

367462733

NE1

Goat

Brazil

ORFV011

Abrahao et al. (unpublished)

24

344050167

A

Goat

Brazil

ORFV011

Abrahao et al. (unpublished)

25

344050165

D

Sheep

Brazil

ORFV011

Abrahao et al. (unpublished)

26

325073632

D1701

Goat

Germany

ORFV011, 059, 109, 110

Mayr (1981)[15]; McGuire(2012)[16]

27

74230714

NZ2

Sheep

New Zealand

ORFV011, 059, 109, 110

Mercer et al. (2006)[13]

28

40019123

OV-SA00

Sheep

USA

ORFV011, 059, 109, 110

Delhon et al. (2004)[14]

29

40019122

OV-IA82

Sheep

USA

ORFV011, 059, 109, 110

Delhon et al. (2004)[14]

30

37594893

NA

Musk ox

USA

ORFV011

Guo et al. (2004)[20]

31

37594897

NA

Takin

USA

ORFV011

Guo et al. (2004)[20]

32

37594895

NA

Sheep

USA

ORFV011

Guo et al. (2004)[20]

33

33415066

NA

Goat

USA

ORFV011

Guo et al. (2003)[20]

34

33415068

vaccine

Goat

USA

ORFV011

Guo et al. (2003)[8]

35

345843287

F07.821R

Reindeer

Finland

ORFV011

Hautaniemi et al. (2011)[21]

36

345843285

F07.816R

Reindeer

Finland

ORFV011

Hautaniemi et al. (2011)[21]

37

345843283

F07.810R

Reindeer

Finland

ORFV011

Hautaniemi et al. (2011)[21]

38

345843281

F07.808R

Reindeer

Finland

ORFV011

Hautaniemi et al. (2011)[21]

39

345843277

F94.848R

Reindeer

Finland

ORFV011

Hautaniemi et al. (2011)[21]

40

345843279

F92.849R

Reindeer

Finland

ORFV011

Hautaniemi et al. (2011)[21]

41

345843289

F07.3748S

Sheep

Finland

ORFV011

Hautaniemi et al. (2011)[21]

42

345843291

F09.1160S

Sheep

Finland

ORFV011

Hautaniemi et al. (2011)[21]

43

345843271

F07.801R

Reindeer

Finland

ORFV011

Hautaniemi et al. (2011)[21]

 

255761105

Jodhpur

Camel

India

ORFV011

Lucinda et al. (2010)[22]

 

295646610

Cam/09

Camel

India

ORFV011

Venkatesan et al. (unpublished)

 

345843273

F05.990C

Bovine

Finland

ORFV011

Hautaniemi et al. (2011)[21]

 

345843275

F10.3081C

Bovine

Finland

ORFV011

Hautaniemi et al. (2011)[21]

 

345843269

F07.798R

Reindeer

Finland

ORFV011

Hautaniemi et al. (2011)[21]

 

37594899

PCV

NA

USA

ORFV011

Guo et al. (2004)[20]

 

37594901

BPSV

NA

USA

ORFV011

Guo et al. (2004)[20]

 

40019124

BV-AR02

Cattle

USA

ORFV011, 059, 09, 110

Delhon et al. (2004)[14]

 
  1. NA: Not available. Virus strains above F07.801R were applied to pairwise distance calculations and nMDS analysis.