Skip to main content

Table 5 GO Biological Process, GO Molecular functions and KEGG pathways analysis of differentially regulated genes

From: Transcriptomic markers meet the real world: finding diagnostic signatures of corticosteroid treatment in commercial beef samples

Category

Term

Count

PValue

FE

GO_BP_FAT

G-protein coupled receptor protein signaling pathway

114

1.44E-05

1.446

GO_BP_FAT

Cell surface receptor linked signal transduction

162

3.14E-05

1.328

GO_BP_FAT

Regulation of transcription, DNA-dependent

125

0.014

1.200

GO_BP_FAT

Regulation of RNA metabolic process

126

0.021

1.182

GO_BP_FAT

tRNA thio-modification

4

0.022

5.332

GO_BP_FAT

Regionalization

19

0.023

1.688

GO_BP_FAT

Pattern specification process

23

0.030

1.552

GO_BP_FAT

Anterior/posterior pattern formation

15

0.031

1.777

GO_BP_FAT

Peptide transport

8

0.037

2.369

GO_BP_FAT

tRNA wobble uridine modification

4

0.048

4.265

GO_BP_FAT

tRNA wobble base modification

4

0.048

4.265

GO_BP_FAT

Pancreas development

4

0.048

4.265

GO_BP_FAT

Positive regulation of organelle organization

8

0.049

2.245

GO_CC_FAT

Intrinsic to membrane

405

2.21E-05

1.157

GO_CC_FAT

Integral to membrane

390

2.86E-05

1.160

GO_CC_FAT

Myofibril

20

8.78E-05

2.511

GO_CC_FAT

Contractile fibre

20

1.84E-04

2.400

GO_CC_FAT

Sarcomere

17

4.27E-04

2.481

GO_CC_FAT

Contractile fibre part

17

8.64E-04

2.354

GO_CC_FAT

Intermediate filament cytoskeleton

18

0.003

2.025

GO_CC_FAT

Intermediate filament

18

0.003

2.025

GO_CC_FAT

I band

11

0.004

2.582

GO_CC_FAT

Keratin filament

10

0.008

2.571

GO_CC_FAT

Z disc

10

0.008

2.571

GO_CC_FAT

Transcription factor complex

22

0.020

1.627

GO_MF_FAT

Olfactory receptor activity

42

9.56E-04

1.629

GO_MF_FAT

Calcium ion binding

95

0.004

1.292

GO_MF_FAT

Passive transmembrane transporter activity

52

0.027

1.312

GO_MF_FAT

Channel activity

52

0.027

1.312

GO_MF_FAT

Substrate specific channel activity

51

0.028

1.312

GO_MF_FAT

Ion channel activity

50

0.033

1.306

GO_MF_FAT

Transcription factor activity

73

0.033

1.236

KEGG

Olfactory transduction

54

2.24E-05

1.725

  1. GO, Gene Ontology; BP: Biological Process; MF, Molecular Function; CC, cellular component; P value: modified Fisher exact P value calculated by DAVID software; FE, Fold Enrichment defined as the ratio of the two proportions: input genes involved in a biological process and the background information.
  2. DAVID functional annotation of the complete list of differentially regulated genes between group A and group B (see Figure 3B).