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Table 3 Coxiella burnetii MLVA types observed in 96 animal and 94 environmental samples obtained from 45 dairy farm locations in the Netherlands

From: Molecular typing of Coxiella burnetii from animal and environmental matrices during Q fever epidemics in the Netherlands

C. burnetiiMLVA genotype Origin Number of samples Number of repeats
   Total Animal Environment MLVA multiplex assay 1 MLVA multiplex assay 2
Ms27 Ms28 Ms34 Ms20b Ms24 Ms31
A Samples 145 (5) 69 76 (5) 3 3 7 7.5 11 3
B Samples 24 11 13 3 3 8 7.5 11 3
C Samples 2 2 0 2 7 8 5 13 3
D Samples 9 9 0 4 5 2 4.5 9 3
E Samples 10 (5) 5 5 (5) 2 7 9 5 13 3
F Samples 5 0 5 2 3 3 7.5 11 3
Nine Mile RSA 493 phase I Cultivation 1 1 0 4 6 5 5 27 5
Nine Mile RSA 493 phase I in silico n.a. n.a. n.a. 4 6 5 5 27 5
Dugway 5 J108-111 in silico n.a. n.a. n.a. 4 4 3 7 4 3
RSA 331 in silico n.a. n.a. n.a. 3 3 3 7,5 6 2
CbuG_Q212 in silico n.a. n.a. n.a. 3 4 2 5 7 4
CbuK_Q154 in silico n.a. n.a. n.a. 4 5 2 4.5 8 3
  1. n.a. = not applicable.
  2. Numbers between brackets indicate samples with both genotype A and E. The calculation of the numbers of repeat units per marker are guided by sequencing results.