Table 3 Coxiella burnetii MLVA types observed in 96 animal and 94 environmental samples obtained from 45 dairy farm locations in the Netherlands
C. burnetiiMLVA genotype | Origin | Number of samples | Number of repeats | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Total | Animal | Environment | MLVA multiplex assay 1 | MLVA multiplex assay 2 | ||||
Ms27 | Ms28 | Ms34 | Ms20b | Ms24 | Ms31 | |||||
A | Samples | 145 (5) | 69 | 76 (5) | 3 | 3 | 7 | 7.5 | 11 | 3 |
B | Samples | 24 | 11 | 13 | 3 | 3 | 8 | 7.5 | 11 | 3 |
C | Samples | 2 | 2 | 0 | 2 | 7 | 8 | 5 | 13 | 3 |
D | Samples | 9 | 9 | 0 | 4 | 5 | 2 | 4.5 | 9 | 3 |
E | Samples | 10 (5) | 5 | 5 (5) | 2 | 7 | 9 | 5 | 13 | 3 |
F | Samples | 5 | 0 | 5 | 2 | 3 | 3 | 7.5 | 11 | 3 |
Nine Mile RSA 493 phase I | Cultivation | 1 | 1 | 0 | 4 | 6 | 5 | 5 | 27 | 5 |
Nine Mile RSA 493 phase I | in silico | n.a. | n.a. | n.a. | 4 | 6 | 5 | 5 | 27 | 5 |
Dugway 5 J108-111 | in silico | n.a. | n.a. | n.a. | 4 | 4 | 3 | 7 | 4 | 3 |
RSA 331 | in silico | n.a. | n.a. | n.a. | 3 | 3 | 3 | 7,5 | 6 | 2 |
CbuG_Q212 | in silico | n.a. | n.a. | n.a. | 3 | 4 | 2 | 5 | 7 | 4 |
CbuK_Q154 | in silico | n.a. | n.a. | n.a. | 4 | 5 | 2 | 4.5 | 8 | 3 |